Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1191 ATGGCTCGCATCCCAGGTTTCTTCTTATTTTCAATGCTTGTGTACCTTCACACAATAACAAGCACTGTACAAACATGTGAAACAAGATACTGCGGAGACCCAGAACTTGGACCCTCAATTCAGTATCCTTTTTATTTGAAAGAAGTTGAAAGCGATGATTGTGGGTACCCAAACTTCGGAGTTTTCTGCGACGACCGAAACCAGACATTGATCACACTCGGAAATGCCGGAGATTTTGTCGTCAAAGAGATCTCTTTGGAGGACCATCAAGCTTGGATGAATGACCCAAATCATTGCCTTCCCTCGCGCTTCATCCACGACTTGGACCTTCAACTTCAAAGTTCGCCTTTCCGGTGGAGCACCGATTACTCTACTGTCGTGAACGTCGACTTTCTCAACTGTACTACCCCAGTGCCGGACTCCGCTCAGTTCGCTCACAAAATACCTTGCCTCAGCAGTTCCGACAGCGACAATTTATCCGTCATCGCTGTTTTGTCGGATCCTGCCTTTCCAACAACATCGATGTCGTTCCCCGGATGTGGGTTCATTTCCTCCTCTTTAGTTCCTGTTGATAGTTTTGGACCGGAGCAATTGTGGAAGAACCTTTACTCCGACATGCGGCTGAAATGGAATAACCAGCCTAACTGCATACTCCCCGCGAATCTGGATCCTGATAATCAACACAATGCTTGCTATGAGAACAATCTTCTAAACCCAGATGGAGATCCTCCACATTACAAAATATACAAAATATTAGTGGTCGGAGTAACTGGAGCGGTATGCTTTTGTGTGGCTGGACTTGCCCGTTTATTATGCGCTGAGGTGGAGCCGAACGGTTTGCCACGGCGGAGGATGAACGTGGAGTTAGAGAGAAACACGGCGGAATCCGTTGATGTGGCAATGGGGCTGGACGAGTCAACCATCGAACAGTATCCGAAAACCCAGGTTGGTCACAGTGGAAAATTGCCGAATCCAAGCGATAATGTTTGTTCGATATGTCTGAGTGAATACGAGCCTCTGGAAACATTAAGAACCATTCCTCACTGTAATCATTATTTTCATGCCCATTGTATAGATGGCTGGCTCAAGAAGAAGGGCACGTGTCCCTTGTGTCGTCATCTTCCCCATGGGTCTTCTTAG 1140 0.4693 MARIPGFFLFSMLVYLHTITSTVQTCETRYCGDPELGPSIQYPFYLKEVESDDCGYPNFGVFCDDRNQTLITLGNAGDFVVKEISLEDHQAWMNDPNHCLPSRFIHDLDLQLQSSPFRWSTDYSTVVNVDFLNCTTPVPDSAQFAHKIPCLSSSDSDNLSVIAVLSDPAFPTTSMSFPGCGFISSSLVPVDSFGPEQLWKNLYSDMRLKWNNQPNCILPANLDPDNQHNACYENNLLNPDGDPPHYKIYKILVVGVTGAVCFCVAGLARLLCAEVEPNGLPRRRMNVELERNTAESVDVAMGLDESTIEQYPKTQVGHSGKLPNPSDNVCSICLSEYEPLETLRTIPHCNHYFHAHCIDGWLKKKGTCPLCRHLPHGSS 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1191 379 CDD RING-H2_PA-TM-RING 329 372 - -
Prci10g1191 379 SMART ring_2 330 371 IPR001841 -
Prci10g1191 379 Pfam Wall-associated receptor kinase galacturonan-binding 26 95 IPR025287 GO:0030247
Prci10g1191 379 SUPERFAMILY RING/U-box 323 374 - -
Prci10g1191 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 374 IPR046948 -
Prci10g1191 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 376 IPR013083 -
Prci10g1191 379 ProSiteProfiles Zinc finger RING-type profile. 330 372 IPR001841 -
Prci10g1191 379 Pfam Ring finger domain 329 372 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1191 Prci-Chr10 7961544 7963206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1191 24 375 C3H Transcription Factor Family AT2G46495 32.033 1.75e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1191 - - pcin:129322048 810.446