Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1165 ATGGCCGAGATAAGTGCCGAAGTGTCGATCGATCAAATCCCGTCGAGGAAGCAGCGGAGCCGAAGAGCGTTGAAGGATAAGAACCTCTCAGCCAATGATGCCAAATCCTTGACCAAGAAGCTGCCTGATTCCTCCACGCCACAGGTTTCAAAGGAATCAGACGCCGGAAAGGAGAACCAACCCAGCGTTTCTCAACTGCGCTCCTCACCCAAGAAGGGAAGAGCTGCCTCGAAAAAACAGTCGAAGCAATCTCTTGAGAAAGATTTTCAAGAAATGCAGGAGATGATGCAGAAGTTGCGGCTTGAGAAGGAGCAGACTGAAGAGCTCTTGAAGGTCAAAGATGACATATTGAAGCAGAAGGAAGAAGAGCTTGACGAGCGTGGCCGCGAGCAGGAGAAGCTTCAGACGGAGTTGAAAAAATTGCAGAAGCTCAAGGAGTTCAAACCCATCATGAATTTGCCTATGCTGAGAGACAAGGAGCAAGAAAAGAAGGACAACAAGAAGAAGAATGGATGCGCTGTGAAAAGACCTTCTCCACCTTACATTTTGTGGAGCAAAGATCAATGGGCTGAGATCAAGAAAGCGAATCCAGAGGCAGAATTCAAGGATATTTCAAACATGTTAGGGGCTAAGTGGAAGACCGTCAGCGAGGAAGAGAAACAGCCTTATGAGGAGAAGTATCTAATTGAGAAAGAAGCTTATCTGCGGGTAATCACCAAGGAGAAACGTGAAAGTGAGGCAATGAAGCTGTTAGAAGAGGAGCAAAAGCAAAAGACTGCCATGGAATTGCTTGAACAGTACATGCAGTTCAAACAGGAAACAGAGAAAGAAAGCAAGAAGAGCAGAAAAGAGAAGGATCCACTGAAACCAAAGCATCCTGTGTCAGCTTTTATCTTGTACACGAATGATAGGCGGGCAGCTATTCTTGCCGACAACAAGAGTATCTTGGAGGTTTCAAAGATTGTAGGTGACGAGTGGAAGAACTTGACAGAAGATCAAAAAAGACCTTATGAAGAGATCGCAAAGAAGAATAGGGAGAAATATATTCAAGATATGGAGGCTTACAAACAAAAGAAGGATGAGGAGGCTGCGAATCTCAGGAAGGAAGAGGAGGAGCAAATGAAACTTCAGAAAGAAGAAGCCTTGAAACTGTTAAAGAAGAAAGAGAAAACGGAAAATCTGATCAAGAAGTCAAAGAAGAAGAAACAGAACAAGGAAGACAAGAATTGTGATCCTAACAAGCCTAAGAGACCGCCATCCTCATTTCTGCTATTCAGCAAAGAAGCAAGGAGGAGCATACAGGAGGAACGACCAGGGATGAATAACTCTAACCTGAACGCACTGATATCAGTGAAATGGAAGGAACTGAGCGAGGGAGAGAGAAAAGTGTGGAATGACAAAGCTGCCGAGGCAATGGAGGCATACAAGAAGGAATTGGAGGAGTACAACAAATCCATTGCAGCCAAGTTGGACCAGTAA 1479 0.4476 MAEISAEVSIDQIPSRKQRSRRALKDKNLSANDAKSLTKKLPDSSTPQVSKESDAGKENQPSVSQLRSSPKKGRAASKKQSKQSLEKDFQEMQEMMQKLRLEKEQTEELLKVKDDILKQKEEELDERGREQEKLQTELKKLQKLKEFKPIMNLPMLRDKEQEKKDNKKKNGCAVKRPSPPYILWSKDQWAEIKKANPEAEFKDISNMLGAKWKTVSEEEKQPYEEKYLIEKEAYLRVITKEKRESEAMKLLEEEQKQKTAMELLEQYMQFKQETEKESKKSRKEKDPLKPKHPVSAFILYTNDRRAAILADNKSILEVSKIVGDEWKNLTEDQKRPYEEIAKKNREKYIQDMEAYKQKKDEEAANLRKEEEEQMKLQKEEALKLLKKKEKTENLIKKSKKKKQNKEDKNCDPNKPKRPPSSFLLFSKEARRSIQEERPGMNNSNLNALISVKWKELSEGERKVWNDKAAEAMEAYKKELEEYNKSIAAKLDQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1165 492 CDD HMG-box_AtHMGB6-like_rpt1 175 242 - -
Prci10g1165 492 Gene3D High mobility group box domain 165 238 IPR036910 -
Prci10g1165 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 174 242 IPR009071 -
Prci10g1165 492 MobiDBLite consensus disorder prediction 14 33 - -
Prci10g1165 492 Coils Coil 465 492 - -
Prci10g1165 492 MobiDBLite consensus disorder prediction 150 179 - -
Prci10g1165 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 290 356 IPR009071 -
Prci10g1165 492 MobiDBLite consensus disorder prediction 390 424 - -
Prci10g1165 492 SUPERFAMILY HMG-box 277 362 IPR036910 -
Prci10g1165 492 MobiDBLite consensus disorder prediction 1 102 - -
Prci10g1165 492 Coils Coil 253 273 - -
Prci10g1165 492 MobiDBLite consensus disorder prediction 271 292 - -
Prci10g1165 492 Pfam HMG (high mobility group) box 415 483 IPR009071 -
Prci10g1165 492 Pfam HMG (high mobility group) box 290 356 IPR009071 -
Prci10g1165 492 Pfam HMG (high mobility group) box 174 236 IPR009071 -
Prci10g1165 492 Coils Coil 338 408 - -
Prci10g1165 492 SUPERFAMILY HMG-box 163 237 IPR036910 -
Prci10g1165 492 SUPERFAMILY HMG-box 411 485 IPR036910 -
Prci10g1165 492 Gene3D High mobility group box domain 394 487 IPR036910 -
Prci10g1165 492 MobiDBLite consensus disorder prediction 150 172 - -
Prci10g1165 492 SMART hmgende2 289 357 IPR009071 -
Prci10g1165 492 SMART hmgende2 414 484 IPR009071 -
Prci10g1165 492 SMART hmgende2 173 243 IPR009071 -
Prci10g1165 492 MobiDBLite consensus disorder prediction 271 291 - -
Prci10g1165 492 PANTHER HIGH MOBILITY GROUP B PROTEIN 13 7 489 IPR044601 GO:0003677
Prci10g1165 492 Coils Coil 75 144 - -
Prci10g1165 492 MobiDBLite consensus disorder prediction 352 375 - -
Prci10g1165 492 Gene3D High mobility group box domain 273 368 IPR036910 -
Prci10g1165 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 415 483 IPR009071 -
Prci10g1165 492 MobiDBLite consensus disorder prediction 34 71 - -
Prci10g1165 492 MobiDBLite consensus disorder prediction 79 102 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci10g1165 HMG_box 1.8e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1165 K09273 - jre:108987126 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1165 10 7777231 7779653 Prci10g1165 10 7777231 7779653 ECH