Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1160 ATGACTGCGCCTTCCATCAGATACACCCACCACACTAAACTTGTCTCACCGGAGGAACAACACCATCTGTGCCGAGGAATGAGGTATCCCAGGGTTGTTAGAATATGCGTGGCAGACAGCGATGCCACCGATTCCTCCAGCGACGAAGAAGGAGGGGCTATCACGGGCCACCGCGGAAGGAGGTTCGTCAACGAGATTACCATCACCCAAAACGATGTCGTTGCTAAGCCTGAGAACAAGCGCCGGAAGAGTAATAGGAGCAGAGTGATGGGAAGTCGGCGGGCGATGAAGGCGTCGACGGCGAAGAAGTTCAGAGGAGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAGATCAGAGATCCTCTGCGACGTGTACGGTTGTGGTTGGGAACGTACGAAACTGCAGAGGAAGCTGCGATGGTGTACGACAAAGCAGCCATTCAGCTGAGAGGAGCAGAGGCACTGACCAATTTCATAACGCCACCGGGGAAGGTGACGGAGGAGAAGAAGTCGGATTCCCCGAAATCTGTTCTTCAGTCTCAGTACTGTAGTTTGTCAGAGGAGGTTGAATCTGTAACAACCAAAGATGATATGAGTGAATGTCGGGACGAATCGCCGTCGTCGTCGTCAGGGGTATCGGAGAATTTCTCAGAATTTCCGGCGGACGTATTCGACTTCGAGACATCGCTGCCGGATATATTTGATGACACAAATATTACAGGAAGCATCTACTCCGATGCGTGGGTCACTCCCGCCGAAAACTTCAACTTGGGTTTCGATTTCTATTCGGGTTTCGGATTCTCGAGCTGGCACAGAGATGACTATTTTCAAGATATCGGTGATTTGTTTGTCACAGATCCTCTTGTTGCTCTTTGA 879 0.5154 MTAPSIRYTHHTKLVSPEEQHHLCRGMRYPRVVRICVADSDATDSSSDEEGGAITGHRGRRFVNEITITQNDVVAKPENKRRKSNRSRVMGSRRAMKASTAKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYETAEEAAMVYDKAAIQLRGAEALTNFITPPGKVTEEKKSDSPKSVLQSQYCSLSEEVESVTTKDDMSECRDESPSSSSGVSENFSEFPADVFDFETSLPDIFDDTNITGSIYSDAWVTPAENFNLGFDFYSGFGFSSWHRDDYFQDIGDLFVTDPLVAL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1160 292 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Prci10g1160 292 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 213 - -
Prci10g1160 292 SMART rav1_2 103 166 IPR001471 GO:0003700|GO:0006355
Prci10g1160 292 MobiDBLite consensus disorder prediction 77 103 - -
Prci10g1160 292 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Prci10g1160 292 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Prci10g1160 292 ProSiteProfiles AP2/ERF domain profile. 103 160 IPR001471 GO:0003700|GO:0006355
Prci10g1160 292 FunFam Ethylene-responsive transcription factor 2 102 161 - -
Prci10g1160 292 CDD AP2 102 159 IPR001471 GO:0003700|GO:0006355
Prci10g1160 292 MobiDBLite consensus disorder prediction 194 216 - -
Prci10g1160 292 Gene3D AP2/ERF domain 102 161 IPR036955 GO:0003700|GO:0006355
Prci10g1160 292 SUPERFAMILY DNA-binding domain 103 159 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1160 Prci-Chr10 7722569 7724366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1160 1 292 AP2-EREBP Transcription Factor Family AT4G23750 40.793 1.16e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci10g1160 AP2 6.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1160 - - pcin:129323193 567