Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1093 ATGGGTCACCACTCTTGCTGCAATCAACAAAAGGTTAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAACTCATCAGATACATTACCACACATGGCTATGGCTGCTGGAGTGAAGTCCCTGAGAAAGCTGGTCTGCAACGGTGCGGCAAGAGTTGTCGCCTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGCAGATTCACTCCAGAAGAGGAGAAGTTAATTATAAGCCTTCATGGCGTCGTAGGCAACAGGTGGGCTCACATTGCAAGCCACTTGCCTGGAAGAACTGACAACGAGATAAAGAACTATTGGAATTCGTGGATCAAAAAGAAAATAAGAAAGCCTTCGGTGTCTTCAACCGCCACTGCACAAAGCAGCGTGGATCACCATCAGCATCCACAATATAACTTTAATAATCCCAGCCAATTAGACTTTGCAAACCAAGATAATCTAACCGCAAAGCCCCAACCAGTTCAAGACACTATATTTTCCTCCACATGCCCCTTATTTATGTTTGACATTAGCTCTTTAGATAGTTCTGCAACAACGATGACGACAGTACTGGACAACAACAATAATAATGCAAGACCAGAAATGTTAATCCACCAGCAAGATGCTGGCATGGGTTTAAGCACAGAAACATGGAATCTGAGCCACCATCAAATTCAAGCCTTTCCTCCTCCATCGTCAGCAGCTTTCACTGCAGCTTCAGGAATGATCGCTTCCAATTATCTGCCACCATTGATAGAGAACGTGGACAATATGATGCAGAATATTCATGAAGTGCAATCTTGCAGCATGGACGACGGAGAGATGGCACTAGAGTGCTTGCAGAGGCATGAGTTGAACGAGTGGGTGGACACGCAGCAACACTGTCCTAACTTTATTTTCTGGGAAAATGTGGAAGGACAGCTTGGTGGGGAAGACATGGCACCGAATTCTTCAAACTTGGGGACAGCTACACTTTCTTCTTTTCCTTCGTCCTTAGGTTTACTCATTTCTGGGCGAAGGGATAAAGCAGGCGAGAAGAGTACTCACAGGGTCTTGTGTTGCTGCCGCCTCCGCCTACTCTTCCACCTCGCAACCATGATTATTCCTGAGAAGAACCGTCGTGAGATCTGCAAATACCTCTTCAAAGAGGGAGTTTGCTATGCAAAGAAGGACTTCAATATGCCTAAGCACCCCGAGATTGACGTGCCGAATCTGCAAGTCATTAAACTGATGCAGAGCTTTAAGTCCAAGGAGTACGTGCGTGAGACATTTGCTTGGATGCACTACTACTGGTACCTCACTAACGATGGCATTGAGTTCCTTAGAACTTACCTCAATCTTCCTTCCGAAATCGTGCCTGCTACTTTGAAGAAACAAGCTAAACCAGTTGGTAGACCATTTGGTGGCCCCCCTGGTGATCGTCCAAGGGGCCCACCTCGTTTTGAAGGAGAACGTAGGTTTGGTGATCGTGATGGATACCGTGGAGGTCCCCGAGGACCTGGTGGCGACTTTGGAGACAAGGGTGGAGCTCCTGCTGACTACAGGCCTTCATTTGGGGGTTCTGGAGGAAGGTCTGGATTTGGTCGCGGTGCTGGTGGCTTTGGAGCACCAACAAACTCAAATCTTTCTTAA 1635 0.4691 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVSSTATAQSSVDHHQHPQYNFNNPSQLDFANQDNLTAKPQPVQDTIFSSTCPLFMFDISSLDSSATTMTTVLDNNNNNARPEMLIHQQDAGMGLSTETWNLSHHQIQAFPPPSSAAFTAASGMIASNYLPPLIENVDNMMQNIHEVQSCSMDDGEMALECLQRHELNEWVDTQQHCPNFIFWENVEGQLGGEDMAPNSSNLGTATLSSFPSSLGLLISGRRDKAGEKSTHRVLCCCRLRLLFHLATMIIPEKNRREICKYLFKEGVCYAKKDFNMPKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPVGRPFGGPPGDRPRGPPRFEGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGSGGRSGFGRGAGGFGAPTNSNLS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1093 544 Gene3D - 69 140 - -
Prci10g1093 544 MobiDBLite consensus disorder prediction 459 544 - -
Prci10g1093 544 CDD SANT 69 112 IPR001005 -
Prci10g1093 544 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Prci10g1093 544 Gene3D - 367 470 IPR036388 -
Prci10g1093 544 Gene3D - 6 66 - -
Prci10g1093 544 FunFam MYB transcription factor 6 66 - -
Prci10g1093 544 CDD SANT 17 61 IPR001005 -
Prci10g1093 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Prci10g1093 544 FunFam 40S ribosomal protein S10 367 470 - -
Prci10g1093 544 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Prci10g1093 544 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Prci10g1093 544 SMART sant 66 114 IPR001005 -
Prci10g1093 544 SMART sant 13 63 IPR001005 -
Prci10g1093 544 MobiDBLite consensus disorder prediction 122 142 - -
Prci10g1093 544 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Prci10g1093 544 FunFam Transcription factor MYB26 68 139 - -
Prci10g1093 544 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Prci10g1093 544 MobiDBLite consensus disorder prediction 478 494 - -
Prci10g1093 544 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Prci10g1093 544 Pfam Plectin/S10 domain 369 460 IPR005326 -
Prci10g1093 544 PANTHER MYB DOMAIN PROTEIN 55 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1093 Prci-Chr10 7268337 7274732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1093 1 322 MYB Transcription Factor Family AT1G63910 50.678 2.75e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci10g1093 S10_plectin 2.7e-43 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1093 K09422 K02947 gmx:100803556 696.812