Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1051 ATGGATACAAAAGAAGATGTGAGGGTCGGAGCAAACAAATTCTCAGAGAGGCAGCCGTTGGGCACGGCGGCTCAGACCGACAAGGACTACAAGGAACCACCACCAGCACCCTTGTTTGAGCCAGGCGAGCTCAAGTCATGGTCATTCTACAGAGCCGGCATTGCCGAGTTCGTGGCCACCTTCTTGTTCCTCTACATCACCATCTTGACCGTCATGGGCGTCAAGAGGTCACCCAAGTGTGCCTCGGTTGGCATCCAAGGCATTGCCTGGGCCTTTGGTGGTATGATCTTCGCTCTGGTCTACTGCACTGCCGGAATCTCAGGTGGACACATCAACCCAGCAGTGACCTTTGGTCTGTTCTTGGCGAGGAAGCTGTCCCTCACCAGAGCAGTGTTCTACATGGTGATGCAGTGTCTGGGAGCCATATGTGGTGCTGGTGTTGTGAAGGGTTTTGAGGGTAATGCTCGGTATCAGATGTACAATGGTGGAGCAAATATGGTAAACCACGGATACACCAAGGGTGATGCTCTTGGAGCTGAGATTGTTGGCACCTTTGTCCTTGTCTACACTGTGTTTTCTGCCACTGATGCCAAGAGAAGCGCCAGAGACTCTCATGTTCCTGTTTTGGCTCCTCTTCCCATCGGATTTGCTGTGTTCTTAGTGCACTTGGCAACCATTCCCATCACAGGAACGAGTATAAACCCAGCAAGAAGTTTGGGTGCTGCCATCGTCTTCAACAGGGACGCTGCATGGGATGATCAATGGATATTCTGGGTTGGACCTTTCATTGGAGCTGCCCTGGCTGCTGTATATCACCAGATCGTCATCCGAGCCATTCCTTTCAAGTCAAGGGCTTAA 858 0.5175 MDTKEDVRVGANKFSERQPLGTAAQTDKDYKEPPPAPLFEPGELKSWSFYRAGIAEFVATFLFLYITILTVMGVKRSPKCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGNARYQMYNGGANMVNHGYTKGDALGAEIVGTFVLVYTVFSATDAKRSARDSHVPVLAPLPIGFAVFLVHLATIPITGTSINPARSLGAAIVFNRDAAWDDQWIFWVGPFIGAALAAVYHQIVIRAIPFKSRA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1051 285 ProSitePatterns MIP family signature. 110 118 IPR022357 -
Prci10g1051 285 NCBIfam MIP family channel protein 55 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 SUPERFAMILY Aquaporin-like 43 277 IPR023271 -
Prci10g1051 285 CDD MIP 51 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 Pfam Major intrinsic protein 43 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 PRINTS Major intrinsic protein family signature 129 148 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 PRINTS Major intrinsic protein family signature 92 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 PRINTS Major intrinsic protein family signature 179 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 PRINTS Major intrinsic protein family signature 215 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 PRINTS Major intrinsic protein family signature 51 70 IPR000425 GO:0015267|GO:0016020|GO:0055085
Prci10g1051 285 MobiDBLite consensus disorder prediction 1 33 - -
Prci10g1051 285 FunFam Probable aquaporin PIP1-2 36 285 - -
Prci10g1051 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 11 280 IPR034294 -
Prci10g1051 285 Gene3D Glycerol uptake facilitator protein. 36 283 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1051 Prci-Chr10 7024510 7026352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1051 4 284 Major Intrinsic Protein MIP AT4G23400 87.279 1.56e-172 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1051 K09872 - gmx:100793242 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g1051 10 7024510 7026352 Prci10g1051 10 7024510 7026352 ECH