Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g1041 ATGGTCCCGGAGAACCTGAAGAAACAACTCGCCTTGGCTGTGAGAAGCATTCAGTGGAGCTACGCAATCTACTGGTCTGGTTCACCAAACAACCCCGGCTTGTTCGAGTGGGGTGAAGGGTACTACAATGGGGACATAAAGACGAGGAAAACAAGCCAAGCAGGAGAACTTAATTCTGATCAAATAGGTTCACGGAGGAGTGAGCAGCTCAGAGATCTATATGAGTCCCTTGCAACTGCAGAATCCAGTCCACAAGCTAAAAGGTCTTCAGCTGCGCTATCCCCTGAGGATCTCACTGATACGGAATGGTATTACTTGGTGTGCATGTCGTTCGTATTCAACATGGGCCAAGGGTTGCCTGGAAGAACTCTGGCGAAAGGCCTACCCATTTGGCTGTACAATGCCCATTTGGCTGATAGCAGAATTTTTAGTCGCTCCCTTCTGGCAAAGAGTGCATCCATTCAGACAGTGGTGTGCTTTCCTTTTCTGGATGGTGTTCTTGAGCTAGGCACAACCGATCTGGTCTCAGAGGACCTCAGTCTCATTCAACGCATGAGAACTTCTTACTTGGATATTTTAGATGCCAAAGTTCGCAAGAACTCTGGAGTTGCATTCAACACTGGAGACGGTGAAGAAATTGTTGGTGCAGCATTTGATCATAATGCTTTTGACGTTAAATTGACTCCTGAATCAGAATATGACGTACCCAATGCAACTTCTCCCAATAATAGTTCAAATGGGTTTCAAGTCAATAAGCAAGCGGATGAGAGATTCATGGTTGAAAGGATAAATGGTGTTGCTTCCCATGTCCAAAGCTGGCAAGTGATGGAGGATGAGTTGAGTAATTGTGCCCATACTTCCATGAATACTAGTGACTGTATATCTCAAACTTTTGCTAGTTCTGAAAAGAATGCTTCTGTTCCCAAAGGCGATCGATGTGGGCAAGATCTTCAAGAGTGCAAAAACAAAAAAAAGACCGAAGTGGATGTTCATAGTGATGATTGGCATTACCAAAATGTTCTTTCTTCTCTTCTTAAAAGCTCAGACCAATTAATTATGGGATCACATTTTCAAAACTCTCATTGTGAATCCAACTTTGTCAGTTGGAGGAAAGAAGGATCAATGGTTGTTCAACGGCCAAGAGGGGGAACCCACCAAAGAATTTTGAAGAAGATATTGTTTGAAGTTCCTCGTATGCACACAGATTGGTTGCTTGAGTCTCAAGAAGAAAATGACTATAAAGAGGGAATGAGACCTGAAGCTGATGAAATTGGCTTGAGCCATGTACTGTCTGAAAGAAAGAGAAGGGCAAAACTGAATGAAAGGTTTTTAACCCTTAAATCAATGGTTCCTTTGATTACTAGGGATGACAAAGTTTCGATACTAGATGAGGCAATTGAACACCTTAAAAAGCTGGAGAAAAAGGTGAGAGAGTTGGAAGCTCTCAAGGAGTCCAAAGATTCAGAGACTAGAACTAAAAGAGCACCTCAAGATGTGGTGGAAAGGACTTGCGATAATTACTGTAACAACAGAGCTGATAATGGCAAGAAGCCAGCGATGAACAAAAGGAAGGCTTGTGACGTTGATGAGACAGTGACAGAGATGGATTCAGTTCGTCTAAAAGATATTTCTAATAATGTTACTATCTGCATGAACGACAATGAGGTTTTGATTGAAATGAAGTGTCCTTGGAGGGAAGGAGTTCTGCTAGAGATAATGGAAGCCGTAAGCAATCTTCATTTAGATTTTCATTCGGTTCATTCATCAGAAGCCGATGGGACTCTTTATTTAACCATGAAATCCAAGATCAGAGGAGCAGCTCTTTCCTCAACAAAAAAGATCAAACAAGCACTCCTTAAGGCAGCTTGGAAGTGTTGA 1878 0.4239 MVPENLKKQLALAVRSIQWSYAIYWSGSPNNPGLFEWGEGYYNGDIKTRKTSQAGELNSDQIGSRRSEQLRDLYESLATAESSPQAKRSSAALSPEDLTDTEWYYLVCMSFVFNMGQGLPGRTLAKGLPIWLYNAHLADSRIFSRSLLAKSASIQTVVCFPFLDGVLELGTTDLVSEDLSLIQRMRTSYLDILDAKVRKNSGVAFNTGDGEEIVGAAFDHNAFDVKLTPESEYDVPNATSPNNSSNGFQVNKQADERFMVERINGVASHVQSWQVMEDELSNCAHTSMNTSDCISQTFASSEKNASVPKGDRCGQDLQECKNKKKTEVDVHSDDWHYQNVLSSLLKSSDQLIMGSHFQNSHCESNFVSWRKEGSMVVQRPRGGTHQRILKKILFEVPRMHTDWLLESQEENDYKEGMRPEADEIGLSHVLSERKRRAKLNERFLTLKSMVPLITRDDKVSILDEAIEHLKKLEKKVRELEALKESKDSETRTKRAPQDVVERTCDNYCNNRADNGKKPAMNKRKACDVDETVTEMDSVRLKDISNNVTICMNDNEVLIEMKCPWREGVLLEIMEAVSNLHLDFHSVHSSEADGTLYLTMKSKIRGAALSSTKKIKQALLKAAWKC 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g1041 625 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 485 IPR036638 GO:0046983
Prci10g1041 625 SMART finulus 429 478 IPR011598 GO:0046983
Prci10g1041 625 Pfam Helix-loop-helix DNA-binding domain 427 473 IPR011598 GO:0046983
Prci10g1041 625 Gene3D - 423 485 IPR036638 GO:0046983
Prci10g1041 625 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 472 IPR011598 GO:0046983
Prci10g1041 625 PANTHER TRANSCRIPTION FACTOR TT8 2 620 - -
Prci10g1041 625 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 188 IPR025610 -
Prci10g1041 625 Coils Coil 462 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g1041 Prci-Chr10 6992153 6996264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g1041 2 625 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G41315 48.182 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g1041 bHLH-MYC_N 5.5e-48 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g1041 - - gmx:100808167 783.097