LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci10g1000	ATGTACTCGTTAATCGTAACAGAACGATCTAGCACACTGTCGAAAATTCTCTGCAATTTTATTTTGGCCCGAAACATGGGTGGGGGTCCTCGGACTTTCCCGGGCGGCGTCAGCAAGTGGAAATGGAAGCGCATGCACGAGAAGCGAGCCAGAGATAAAGAGAGAAGGCTTCTCGATCAAGAAAAGCAGCTTTACCAGGCTCGTATTCGCTCCCATATTCGAGCGAAACTCGCGGCAAAACCTGACACCTCAAGCGCCACTCACAGCCCTATGGCCCCCGAGGACCACATTAAGGCCTTAGCCAATCGATTTATGAAGGAAGGGGCTGAAGATCTCTGGAACAGAAACGATGGTCCGTTGAAGCCTCCGCCTCCGCGTCTCAGAGAATTTCCGGGATCAAGCAGACGGCGAGGATCAATCGCGTCGCCCGTGGATCTGAGGAAACTGGTACTGGAAGGCCGTCGCATATTTTCTGATCGCCAAAATGACAATCTGATGAATACGAGTAGTAATTATACTCCGACAAGGAATTACTCAACGCAAAGTCGAAGGAAGTTTCAGAAGAAAGAGAGCTCGTCAGATGAAGAAGATTCCACTTTTGGTTTGGAGGGAAATCCTGCAAGATCCATTGCCAGAAATTCATTTAGTGGTCAGAAAACCCTGATCAATGCAAATGCGGGTGAGTTTATAAATGAGAAGAAAAATATCCCCAAAAGGCCGCGAAAATTATGGAGAGATGACAGTTCTTCCGGCGAGAGTGAATCGGACATGGATTCAGACGGTTTAGGGATTGTCAGGGGTGGAAATAAGATAGGTAGTAGTGCTTCTCTGGGGAAGTATGACGTTAAGACGAGGAGGAGGATGCCACCGAAGTCGTATGACGAGGAGAGTGACCTCTCGGAACAGGTTGAACTGATCAGGTATGAACTAAACAAGAGGAAGATGGCCGAATATGAGCAGCATAAAAGTGAGGAAGATGCATTACTTGGTCAGAAAAGATTTGATGAGTGTGGTATATCACCATTGACAATCAAAGCACTTTCTTCAGCTGGTTATATTCGCATGACTCGAGTTCAAGAGGCTAGCCTCTCTGTTTGCCTTGAGGGCAAGGATGCTTTGGTCAAAGCTAAAACTGGCACTGGGAAAAGTGCAGCATTTTTGCTTCCTGCTATTGAAACAGTTCTTAAGGCAATGAGTATAAATGCCCCTCAACGTGTGCCTCCAATACGTGTTCTGATCCTCTGTCCTACCCGAGAACTTGCAACTCAAATCACTGCGGAATTAAAAGTTTTACTCAAGTACCATGATGGAATTGGAGTTCAAACTCTAATAGGAGGTATTCGATTTAAAGATGACCAAAAACGTCTTGAATCAGATCCATCCCAGATCATTGTTGCTACTCCAGGCAGGTTGCTGGATCATATTGAGTATAAGTCTGGGATATCTCTACGATTGATGGGTTTGCAGATGCTTATACTTGATGAAGCTGATCATTTATTGGACCTGGGTTTTCGAAAGAGTGTAGAAAAACTTGTTGATTGTTTGCCCCGTCAAAGGCAATCCTTGTTATTTTCTGCAACCATACCAAAGGAGGTTCGACGTATATCTCAACTTGTTTTGAAAAGGGATCACACGTATATAGACACAGTGGGGATAAATTGTGTGGAAACTCCGGTTAAAGTAAAGCAGTCTTATCTTGTTGCTCCTCATGAATCTCATTTTCAAATATTGCACCATATTTTGAAGGAGCATATCTTGCAGGCACCTGATTATAAGGTTATTGTTTTCTGTACAACTGGGATGGTGACTTCACTCTTGTATCAACTTCTCCGGGAAATGAAAATGAATGTTAGGGAGATACATTCCCGAAAACCTCAACTTTATCGAACTCGCATGTCGGATGAGTTCAGAGAATCCAAACAATTGATTCTTGTCTCATCTGATGTTTCATCTCGTGGAATGAATTACCCTGATGTTAGTTTAGTCATCCAGGTGGGCATTCCTACTGACCGAGAACAATATATCCATCGTGTTGGAAGAACAGGACGAGAAGGGAAAGAAGGGGAATGCATATTGCTAATTGCTCCATGGGAAGAGTACTTTTTAGATGAAATTAAAGATCTCCCTCTCACGAGATTCCCTTTACCAGATATAGATCCCGAGACAAAGCTTCAGATGGTTTATCATTTCCTGCGAACTTCATGA	2205	0.439	MYSLIVTERSSTLSKILCNFILARNMGGGPRTFPGGVSKWKWKRMHEKRARDKERRLLDQEKQLYQARIRSHIRAKLAAKPDTSSATHSPMAPEDHIKALANRFMKEGAEDLWNRNDGPLKPPPPRLREFPGSSRRRGSIASPVDLRKLVLEGRRIFSDRQNDNLMNTSSNYTPTRNYSTQSRRKFQKKESSSDEEDSTFGLEGNPARSIARNSFSGQKTLINANAGEFINEKKNIPKRPRKLWRDDSSSGESESDMDSDGLGIVRGGNKIGSSASLGKYDVKTRRRMPPKSYDEESDLSEQVELIRYELNKRKMAEYEQHKSEEDALLGQKRFDECGISPLTIKALSSAGYIRMTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIETVLKAMSINAPQRVPPIRVLILCPTRELATQITAELKVLLKYHDGIGVQTLIGGIRFKDDQKRLESDPSQIIVATPGRLLDHIEYKSGISLRLMGLQMLILDEADHLLDLGFRKSVEKLVDCLPRQRQSLLFSATIPKEVRRISQLVLKRDHTYIDTVGINCVETPVKVKQSYLVAPHESHFQILHHILKEHILQAPDYKVIVFCTTGMVTSLLYQLLREMKMNVREIHSRKPQLYRTRMSDEFRESKQLILVSSDVSSRGMNYPDVSLVIQVGIPTDREQYIHRVGRTGREGKEGECILLIAPWEEYFLDEIKDLPLTRFPLPDIDPETKLQMVYHFLRTS	734

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci10g1000	734	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	580	726	IPR001650	-
	Prci10g1000	734	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	363	546	IPR014001	-
	Prci10g1000	734	MobiDBLite	consensus disorder prediction	113	141	-	-
	Prci10g1000	734	Gene3D	-	309	548	IPR027417	-
	Prci10g1000	734	Gene3D	-	556	731	IPR027417	-
	Prci10g1000	734	Pfam	Helicase conserved C-terminal domain	579	684	IPR001650	-
	Prci10g1000	734	CDD	SF2_C_DEAD	561	694	-	-
	Prci10g1000	734	MobiDBLite	consensus disorder prediction	280	298	-	-
	Prci10g1000	734	Pfam	DEAD/DEAH box helicase	356	534	IPR011545	GO:0003676\|GO:0005524
	Prci10g1000	734	MobiDBLite	consensus disorder prediction	161	214	-	-
	Prci10g1000	734	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	408	702	IPR027417	-
	Prci10g1000	734	MobiDBLite	consensus disorder prediction	240	298	-	-
	Prci10g1000	734	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	332	360	IPR014014	GO:0003724
	Prci10g1000	734	Coils	Coil	43	63	-	-
	Prci10g1000	734	SMART	ultradead3	351	562	IPR014001	-
	Prci10g1000	734	PANTHER	RNA HELICASE	298	708	-	-
	Prci10g1000	734	MobiDBLite	consensus disorder prediction	161	181	-	-
	Prci10g1000	734	SMART	helicmild6	604	685	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci10g1000	Prci-Chr10	6785872	6790351	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci10g1000	334	710	Eukaryotic Initiation Factors Gene Family	AT3G19760	29.114	7.17e-46	167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci10g1000	-		-	pcin:129284459	1414.44