Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0987 ATGGCGCCATTGCCGGTGGAGCAGACCGGTGAATCCGCACCGACTGACTCGCAGAGATCTATCCCGACGCCGTTTCTGACGAAAACCTACCAACTTGTAGACGACCCCTCTGTGGATGACCTGATTTCCTGGAACGAAGATGGAACGAGTTTCATAGTTTGGCGACCCGCTGAGTTCGCCCGGGATTTGCTTCCAAAATATTTCAAACACAATAACTTTTCCAGTTTCGTCCGTCAACTGAATACCTATGGATTTCGGAAGGTTGTCCCCGATCGTTGGGAATTCGTTAATGATTGTTTCCGACGAGGCGAGAGAAGCCTACTTCGGGACATTCAACGGCGGAAAATATCGACGCCCACGGCTGCCGTAGCAACGGCCAATACAGTGACGGTGGCTGCAGTACCTGCCGCCGCCCTAGGGGTGTCTCCGACCAACTCCGGTGAGGAACAGGTAATCTCTTCGAACACATCTCCGGTTGCCGCACCTAACACAGTGCAGCGCACCACAAGTTGCACCACTGCACCCGAGCTCTTAGAAGAGAATGAACAGCTTCGGAAAGAGAACATGCAATTGAGTAACGAATTGAGTCAATTGAAGGGGTTGTGTAATAATATACTGTCATTGATGACGAATTATGCTTCAAGCCAATTAGAGTCCGGTAGTGCCGCCGAAGCAAAACCGTTGGAGCTTTTACGTGCGACGCAGCTTTCGGCAGAGGAAGCCACCGTAGGAGGCGGCGCTTCGCAAGAGACGAAAGTTGCAGAAGTGGAGGTGCCCAAATTGTTTGGGGTTTCAATCGGGACAAAACGACGTCGGAGTTCGGAGGTTGAGGAGGCAGAAAAAGAACAAAATCAAACACAATCGTCCCAGGAACCCGATGGTGGTTCCGATGTAAAAATAGAGCCGTTAGATGGCAGTAATTCCGACGATCAGGAGACACCCTGGTTAGAGCTTGGAAAACAATAG 966 0.5093 MAPLPVEQTGESAPTDSQRSIPTPFLTKTYQLVDDPSVDDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFVNDCFRRGERSLLRDIQRRKISTPTAAVATANTVTVAAVPAAALGVSPTNSGEEQVISSNTSPVAAPNTVQRTTSCTTAPELLEENEQLRKENMQLSNELSQLKGLCNNILSLMTNYASSQLESGSAAEAKPLELLRATQLSAEEATVGGGASQETKVAEVEVPKLFGVSIGTKRRRSSEVEEAEKEQNQTQSSQEPDGGSDVKIEPLDGSNSDDQETPWLELGKQ 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0987 321 Gene3D - 17 115 IPR036388 -
Prci10g0987 321 MobiDBLite consensus disorder prediction 1 22 - -
Prci10g0987 321 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Prci10g0987 321 MobiDBLite consensus disorder prediction 267 321 - -
Prci10g0987 321 MobiDBLite consensus disorder prediction 270 284 - -
Prci10g0987 321 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g0987 321 Coils Coil 174 201 - -
Prci10g0987 321 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 290 IPR027725 -
Prci10g0987 321 MobiDBLite consensus disorder prediction 148 167 - -
Prci10g0987 321 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g0987 321 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g0987 321 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g0987 321 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Prci10g0987 321 FunFam Heat stress transcription factor B-4 17 115 - -
Prci10g0987 321 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0987 Prci-Chr10 6747839 6750140 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0987 16 320 HSF AT4G11660 55.891 3.12e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Prci10g0987 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0987 K09419 - qsa:O6P43_034210 441.81