Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0966 ATGAACGTTTGCGGTAATCTCACAAGTAACTCAGAGGGATCCAGCTCACCGTCGCCCTCCGACGAAGAAGCGATCACATTGGCGTCGGCCAAACCCAAGAAGCGAGCCGGACGTAGAGTGTTCAAGGAGACAAGGCATCCTGTGTACCGAGGAGTGCGTCGCAGGGACAAGGACAAGTGGGTCTGCGAGGTTCGTGTTCCTAATAATAACAAATTAAGGATCTGGCTCGGAACCCATTCAACTCCTGAGAAAGCAGCCAGAGCATACGATGTTGCTGCTCTAGCACTTCGTGGCAGGTCGGCTTGCCTCAATTTCGCAGACTCCGCGCAGCGGCTTCCTCTGCCGGCGTCCACCGATCCCGATGAGATACGGCGAGTGGCGATGGAGGCGGTGGAGGCATTTGACGACGACAACGAGAACCAGCACGAGGTAGTCTGTAGCAGTATGGGAATGAAAGAAGATGAGAGGGCCGGTACGAGTATGGAATTAGAAAGTTATGTGAATGGAGTTTCGGAGTTTAAAGATCAGGCGTTGTTTAGCATGGCGGACGAGCCACTGAGATCTCCTCCTGCAGCTTATTCTCTGGGGACACATGGATGGGAAGAAGTGGACCTCGTCGATAATGAGGTGTCACTCTGGAGCTTTACCATTTGA 654 0.5306 MNVCGNLTSNSEGSSSPSPSDEEAITLASAKPKKRAGRRVFKETRHPVYRGVRRRDKDKWVCEVRVPNNNKLRIWLGTHSTPEKAARAYDVAALALRGRSACLNFADSAQRLPLPASTDPDEIRRVAMEAVEAFDDDNENQHEVVCSSMGMKEDERAGTSMELESYVNGVSEFKDQALFSMADEPLRSPPAAYSLGTHGWEEVDLVDNEVSLWSFTI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0966 217 Pfam AP2 domain 47 98 IPR001471 GO:0003700|GO:0006355
Prci10g0966 217 MobiDBLite consensus disorder prediction 1 42 - -
Prci10g0966 217 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 11 214 IPR045277 GO:0003700
Prci10g0966 217 ProSiteProfiles AP2/ERF domain profile. 48 106 IPR001471 GO:0003700|GO:0006355
Prci10g0966 217 PRINTS Ethylene responsive element binding protein signature 88 108 IPR001471 GO:0003700|GO:0006355
Prci10g0966 217 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Prci10g0966 217 SMART rav1_2 48 112 IPR001471 GO:0003700|GO:0006355
Prci10g0966 217 MobiDBLite consensus disorder prediction 1 23 - -
Prci10g0966 217 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
Prci10g0966 217 SUPERFAMILY DNA-binding domain 48 108 IPR016177 GO:0003677
Prci10g0966 217 CDD AP2 49 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0966 Prci-Chr10 6620531 6621627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0966 25 215 AP2-EREBP Transcription Factor Family AT1G63030 52.083 6.09e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci10g0966 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0966 - - gmx:100789097 207.994