Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0949 ATGGTGAGGGGAAAAACTCAGATGAAACGGATAGAAAATGACACGAGCAGGCAAGTCACCTTCTCGAAGCGAAGAAACGGGTTGCTTAAGAAAGCTTTCGAGCTTTCTGTGCTGTGCGATGCCGAAGTTGCGCTCATCATCTTCTCACCAAGAGGCAGGCTCACTGAGTTTTCCAGCTCTCGGTGCTTCAGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTCAAGGACCGGGATCTTGGCACCAGAGGAAGCCAAGCAAATACGCAGGAAGGTGCTGTCAACATGACAAAGAAGATAGAGAATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGGGATGGTCTGGATACGTGTTTCATTGACGAGTTACGTCAGATAGAGAAGCAGCTGGAACAAAGTTTAACCAAAATTAGGGCAAGAAAGGTACACTGGATCGCCTCATTGCAATTATTTCCTCTGAATCAACTGTTCAAGGAACAGATCGAGAAGCTAAGAGAAGAGGTAATGCCGCTACTTGCACGTGCGCACGTATTTCCTCCTTGTATATATGTTTCAGATTATTGCTCATTGAGATTATATTCTCGATGTTTGAGCATTCTCCAGGAAAAGCGCTTACTAGGAGTAAATAAAGAGTTACGGGAACAGTGCGGTGATGAGTTACAGCGGTGGAATTCGCCTGAAGAGCAGGATGTTGAGCACTTGAATGAAAAAACGGATGGCGTGGAGACAGATTTGGTTATAGGACCACCTGAGAGACGAATGCCTTGA 771 0.4527 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLTEFSSSRCFSVNKTVERYLRKVKDRDLGTRGSQANTQEGAVNMTKKIENLEVLKRKLLGDGLDTCFIDELRQIEKQLEQSLTKIRARKVHWIASLQLFPLNQLFKEQIEKLREEVMPLLARAHVFPPCIYVSDYCSLRLYSRCLSILQEKRLLGVNKELREQCGDELQRWNSPEEQDVEHLNEKTDGVETDLVIGPPERRMP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0949 256 Coils Coil 121 141 - -
Prci10g0949 256 MobiDBLite consensus disorder prediction 227 256 - -
Prci10g0949 256 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Prci10g0949 256 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 FunFam Agamous-like MADS-box protein AGL13 13 83 - -
Prci10g0949 256 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Prci10g0949 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Prci10g0949 256 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Prci10g0949 256 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g0949 256 ProSiteProfiles K-box domain profile. 87 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0949 256 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0949 256 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0949 Prci-Chr10 6457860 6463535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0949 1 169 MADS-box Gene Family AT2G45660 62.209 3.20e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g0949 K-box 2.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0949 - - pcin:129323029 498.819