Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0948 ATGGTGAGGGGAAAAACTCAGATGAAACGGATAGAAAATGACACGAGCAGGCAAGTCACCTTCTCGAAGCGAAGAAACGGGTTGCTTAAGAAAGCTTTCGAGCTTTCTGTGCTGTGCGATGCCGAAGTTGCGCTCATCATCTTCTCACCAAGAGGCAGGCTCACTGAGTTTTCCAGCTCTCGGTGCTTCAGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTCAAGGACCGGGATCTTGGCACCAGAGGAAGCCAAGCAAATACGCAGGGACAGGTCAGTGCTTTTAATTCTTTGTTGTTTGCATGTTTGCATTTTAAGGAAGGTGCTGTCAACATGACAAAGAAGATAGAGAATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGGGATGGTCTGGATACGTGTTTCATTGACGAGTTACGTCAGATAGAGAAGCAGCTGGAACAAAGTTTAACCAAAATTAGGGCAAGAAAGAATCAACTGTTCAAGGAACAGATCGAGAAGCTAAGAGAAGAGGTAATGCCGCTACTTGCACGTGCGCACGTATTTCCTCCTTGTATATATGTTTCAGATTATTGCTCATTGAGATTATATTCTCGATGTTTGAGCATTCTCCAGGAAAAGCGCTTACTAGGAGTAAATAAAGAGTTACGGGAACAGTGCGGTGATGAGTTACAGCGGTGGAATTCGCCTGAAGAGCAGGATGTTGAGCACTTGAATGAAAAAACGGATGGCGTGGAGACAGATTTGGTTATAGGACCACCTGAGAGACGAATGCCTTGA 786 0.4466 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLTEFSSSRCFSVNKTVERYLRKVKDRDLGTRGSQANTQGQVSAFNSLLFACLHFKEGAVNMTKKIENLEVLKRKLLGDGLDTCFIDELRQIEKQLEQSLTKIRARKNQLFKEQIEKLREEVMPLLARAHVFPPCIYVSDYCSLRLYSRCLSILQEKRLLGVNKELREQCGDELQRWNSPEEQDVEHLNEKTDGVETDLVIGPPERRMP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0948 261 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Prci10g0948 261 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g0948 261 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Prci10g0948 261 ProSiteProfiles K-box domain profile. 104 228 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0948 261 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g0948 261 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Prci10g0948 261 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g0948 261 MobiDBLite consensus disorder prediction 232 246 - -
Prci10g0948 261 Coils Coil 138 165 - -
Prci10g0948 261 FunFam Agamous-like MADS-box protein AGL13 13 83 - -
Prci10g0948 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 196 - -
Prci10g0948 261 Pfam K-box region 108 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0948 261 MobiDBLite consensus disorder prediction 232 261 - -
Prci10g0948 261 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g0948 261 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g0948 261 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g0948 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0948 Prci-Chr10 6457860 6463539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0948 1 174 MADS-box Gene Family AT2G45660 62.644 1.04e-65 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g0948 K-box 4.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0948 - - pcin:129323029 509.99