Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0946 ATGGTGAGGGGAAAAACTCAGATGAAACGGATAGAAAATGACACGAGCAGGCAAGTCACCTTCTCGAAGCGAAGAAACGGGTTGCTTAAGAAAGCTTTCGAGCTTTCTGTGCTGTGCGATGCCGAAGTTGCGCTCATCATCTTCTCACCAAGAGGCAGGCTCACTGAGTTTTCCAGCTCTCGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTCAAGGACCGGGATCTTGGCACCAGAGGAAGCCAAGCAAATACGCAGGTCAGTGCTTTTAATTCTTTGTTGTTTGCATGTTTGCATTTTAAGGAAGGTGCTGTCAACATGACAAAGAAGATAGAGAATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGGGATGGTCTGGATACGTGTTTCATTGACGAGTTACGTCAGATAGAGAAGCAGCTGGAACAAAGTTTAACCAAAATTAGGGCAAGAAAGGTACACTGGATCGCCTCATTGCAATTATTTCCTCTGAATCAACTGTTCAAGGAACAGATCGAGAAGCTAAGAGAAGAGGTAATGCCGCTACTTGCACGTGCGCACGTATTTCCTCCTTGTATATATGTTTCAGATTATTGCTCATTGAGATTATATTCTCGATGTTTGAGCATTCTCCAGGAAAAGCGCTTACTAGGAGTAAATAAAGAGTTACGGGAACAGTGCGGTGATGAGTTACAGCGGTGGAATTCGCCTGAAGAGCAGGATGTTGAGCACTTGAATGAAAAAACGGATGGCGTGGAGACAGATTTGGTTATAGGACCACCTGAGAGACGAATGCCTTGA 807 0.4436 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLTEFSSSRVNKTVERYLRKVKDRDLGTRGSQANTQVSAFNSLLFACLHFKEGAVNMTKKIENLEVLKRKLLGDGLDTCFIDELRQIEKQLEQSLTKIRARKVHWIASLQLFPLNQLFKEQIEKLREEVMPLLARAHVFPPCIYVSDYCSLRLYSRCLSILQEKRLLGVNKELREQCGDELQRWNSPEEQDVEHLNEKTDGVETDLVIGPPERRMP 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0946 268 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Prci10g0946 268 FunFam Agamous-like MADS-box protein AGL13 13 80 - -
Prci10g0946 268 Coils Coil 133 153 - -
Prci10g0946 268 MobiDBLite consensus disorder prediction 239 268 - -
Prci10g0946 268 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Prci10g0946 268 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Prci10g0946 268 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 ProSiteProfiles K-box domain profile. 99 235 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0946 268 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g0946 268 Pfam K-box region 103 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0946 268 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Prci10g0946 268 MobiDBLite consensus disorder prediction 239 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0946 Prci-Chr10 6457860 6463541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0946 1 181 MADS-box Gene Family AT2G45660 60.221 1.58e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g0946 K-box 8.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0946 - - pcin:129323029 521.931