Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0945 ATGGTGAGGGGAAAAACTCAGATGAAACGGATAGAAAATGACACGAGCAGGCAAGTCACCTTCTCGAAGCGAAGAAACGGGTTGCTTAAGAAAGCTTTCGAGCTTTCTGTGCTGTGCGATGCCGAAGTTGCGCTCATCATCTTCTCACCAAGAGGCAGGCTCACTGAGTTTTCCAGCTCTCGGTGCTTCAGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTCAAGGACCGGGATCTTGGCACCAGAGGAAGCCAAGCAAATACGCAGGGACAGGTCAGTGCTTTTAATTCTTTGTTGTTTGCATGTTTGCATTTTAAGGAAGGTGCTGTCAACATGACAAAGAAGATAGAGAATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGGGATGGTCTGGATACGTGTTTCATTGACGAGTTACGTCAGATAGAGAAGCAGCTGGAACAAAGTTTAACCAAAATTAGGGCAAGAAAGGTACACTGGATCGCCTCATTGCAATTATTTCCTCTGAATCAACTGTTCAAGGAACAGATCGAGAAGCTAAGAGAAGAGGAAAAGCGCTTACTAGGAGTAAATAAAGAGTTACGGGAACAGTGCGGTGATGAGTTACAGCGGTGGAATTCGCCTGAAGAGCAGGATGTTGAGCACTTGAATGAAAAAACGGATGGCGTGGAGACAGATTTGGTTATAGGACCACCTGAGAGACGAATGCCTTGA 720 0.4528 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLTEFSSSRCFSVNKTVERYLRKVKDRDLGTRGSQANTQGQVSAFNSLLFACLHFKEGAVNMTKKIENLEVLKRKLLGDGLDTCFIDELRQIEKQLEQSLTKIRARKVHWIASLQLFPLNQLFKEQIEKLREEEKRLLGVNKELREQCGDELQRWNSPEEQDVEHLNEKTDGVETDLVIGPPERRMP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0945 239 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Prci10g0945 239 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Prci10g0945 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 ProSiteProfiles K-box domain profile. 104 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0945 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 Pfam K-box region 108 200 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0945 239 MobiDBLite consensus disorder prediction 205 224 - -
Prci10g0945 239 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Prci10g0945 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 MobiDBLite consensus disorder prediction 205 239 - -
Prci10g0945 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g0945 239 Coils Coil 175 199 - -
Prci10g0945 239 FunFam Agamous-like MADS-box protein AGL13 13 83 - -
Prci10g0945 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 198 - -
Prci10g0945 239 Coils Coil 138 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0945 Prci-Chr10 6457860 6463542 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0945 1 237 MADS-box Gene Family AT4G22950 49.167 1.95e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g0945 K-box 4.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0945 - - pcin:129323029 442.965