Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0943 ATGGTGAGGGGAAAAACTCAGATGAAACGGATAGAAAATGACACGAGCAGGCAAGTCACCTTCTCGAAGCGAAGAAACGGGTTGCTTAAGAAAGCTTTCGAGCTTTCTGTGCTGTGCGATGCCGAAGTTGCGCTCATCATCTTCTCACCAAGAGGCAGGCTCACTGAGTTTTCCAGCTCTCGGTGCTTCAGTGTGAATAAAACGGTTGAACGCTACCTAAGGAAAGTCAAGGACCGGGATCTTGGCACCAGAGGAAGCCAAGCAAATACGCAGGTCAGTGCTTTTAATTCTTTGTTGTTTGCATGTTTGCATTTTAAGGAAGGTGCTGTCAACATGACAAAGAAGATAGAGAATCTTGAAGTTCTTAAAAGGAAGCTTCTGGGGGATGGTCTGGATACGTGTTTCATTGACGAGTTACGTCAGATAGAGAAGCAGCTGGAACAAAGTTTAACCAAAATTAGGGCAAGAAAGGTACACTGGATCGCCTCATTGCAATTATTTCCTCTGAATCAACTGTTCAAGGAACAGATCGAGAAGCTAAGAGAAGAGGTAATGCCGCTACTTGCACGTGCGCACGTATTTCCTCCTTGTATATATGTTTCAGATTATTGCTCATTGAGATTATATTCTCGATGTTTGAGCATTCTCCAGGAAAAGCGCTTACTAGGAGTAAATAAAGAGTTACGGGAACAGTGCGGTGATGAGTTACAGCGGTGGAATTCGCCTGAAGAGCAGGATGTTGAGCACTTGAATGAAAAAACGGATGGCGTGGAGACAGATTTGGTTATAGGACCACCTGAGAGACGAATGCCTTGA 816 0.4449 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGRLTEFSSSRCFSVNKTVERYLRKVKDRDLGTRGSQANTQVSAFNSLLFACLHFKEGAVNMTKKIENLEVLKRKLLGDGLDTCFIDELRQIEKQLEQSLTKIRARKVHWIASLQLFPLNQLFKEQIEKLREEVMPLLARAHVFPPCIYVSDYCSLRLYSRCLSILQEKRLLGVNKELREQCGDELQRWNSPEEQDVEHLNEKTDGVETDLVIGPPERRMP 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0943 271 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Prci10g0943 271 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 MobiDBLite consensus disorder prediction 242 256 - -
Prci10g0943 271 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 ProSiteProfiles K-box domain profile. 102 238 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci10g0943 271 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 Coils Coil 136 156 - -
Prci10g0943 271 MobiDBLite consensus disorder prediction 242 271 - -
Prci10g0943 271 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Prci10g0943 271 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci10g0943 271 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Prci10g0943 271 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Prci10g0943 271 FunFam Agamous-like MADS-box protein AGL13 13 83 - -
Prci10g0943 271 Pfam K-box region 106 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0943 Prci-Chr10 6457860 6463544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0943 1 184 MADS-box Gene Family AT2G45660 59.239 1.86e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci10g0943 K-box 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0943 - - pcin:129323029 534.643