Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0885 ATGAATACGTTTTCACATGTTCCTCCAGGCTTTCGGTTCCACCCAACAGATGAAGAACTGGTTGATTATTACCTAAGAAAAAAGGTAGCCTCCAAAAGGATTGACCTAGATGTCATTAAAGATGTCGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAGCTATGCAAAATAGGAGTGGAAGAACAAAATGAGTGGTATTTCTTTAGCCACAAAGATAAGAAGTACCCAACTGGAACTCGCACGAATAGAGCCACAAAAGCAGGATTCTGGAAAGCCACGGGAAGAGACAAGGCTATCTACCGTAGGCATTGCCTCATTGGGATGAGAAAGACCCTTGTTTATTACAAGGGACGAGCCCCAAACGGGCAGAAGTCTGACTGGATCATGCATGAGTACCGACTTGAAACTAATGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTATGTCGAGTGTTCAAGAAGAAAATGACGAGCATCCGGAGAGTGGGGGAGTACGAGTCACCATGCTGGTTTGAGGACCAAGTCTCCGTGATGCAAGAGCTTGAATCTGCAAGACCAATTTCTCAACCTTATGCATCTAATTACAACCACCATCACTACTATGTACCTTGCAAGCAGGAACTTCAGTTGCAGTACAACATAACCCATCCCCATGAAGTTTTCCTTCAGCTTCCCCAACTTGAAAGCCCCAAAGTTCCTTACTCAGTGTCCAGTGTTAGCTGCAATTCAACGGTGCCTTATGCTTATGACAGCAACAATAATGGAAGTAGTTTGCAGTCACCTAATTCACTCACTCAGGAAGAGAACATACCTTGTGGAAACAATGATCAAGTGACTGATTGGCGACTTCTTGATAAATTTGTGGCTTCTCAGCTCAGCAGTCACCAGCAAGATGCTTCCAAGGAAGCCACCTGTCCTAATGCAGCACTGCTCCATGTGGATGGTCCTGTCACTATCCAGGCAAACGATCATCAAGCCAAAAGGCCAGAAATTGCGCAGCAGGAATATGCCTCCACGTCCACCTCCAGTTGCCAGATTGACCTGTGGAACTGA 1059 0.4533 MNTFSHVPPGFRFHPTDEELVDYYLRKKVASKRIDLDVIKDVDLYKIEPWDLQELCKIGVEEQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYRRHCLIGMRKTLVYYKGRAPNGQKSDWIMHEYRLETNENGTPQEEGWVVCRVFKKKMTSIRRVGEYESPCWFEDQVSVMQELESARPISQPYASNYNHHHYYVPCKQELQLQYNITHPHEVFLQLPQLESPKVPYSVSSVSCNSTVPYAYDSNNNGSSLQSPNSLTQEENIPCGNNDQVTDWRLLDKFVASQLSSHQQDASKEATCPNAALLHVDGPVTIQANDHQAKRPEIAQQEYASTSTSSCQIDLWN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0885 352 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Prci10g0885 352 MobiDBLite consensus disorder prediction 334 352 - -
Prci10g0885 352 FunFam NAC domain-containing protein 16 160 - -
Prci10g0885 352 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Prci10g0885 352 MobiDBLite consensus disorder prediction 254 273 - -
Prci10g0885 352 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Prci10g0885 352 MobiDBLite consensus disorder prediction 326 352 - -
Prci10g0885 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 267 - -
Prci10g0885 352 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0885 Prci-Chr10 5980641 5984186 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0885 1 351 NAC Transcription Factor Family AT1G12260 57.181 6.31e-137 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Prci10g0885 NAM 1.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0885 - - tcc:18606319 546.199