Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0883 ATGTCATCATCCTCTTCCACTGCCTTATCGCTGGACCACCTCCCTCCTTCCGAGCAGCTTTGTTATGTCCACTGCAACATTTGTGACACTGTCCTCGCTGTAAGTGTTCCTTGCACCAGCTTGTTCAAGACGGTGACTGTGCGATGCGGCCACTGCACCAACCTCCTGCCAGTTAACGTTAACATGCGTGGATTGCTTCTTCCTCCACCAAACCAATTTCACTTGAGTCACTCTTTCTACTCTCCATCTCACAATCTTCTGGAGGAGATACCAAACCCAACCCCAAATTTTTTAATCAACCAGACCACCTCTTCCAATGACTTGTCTGTGCCTTCCAGGATTACAGCTGATGAGCTACCACGCCCACCCCTCATCAATAGACCTCCTGAGAAAAGACAGAGAGTCCCCTCCGCCTACAACCGATTCATTAAGGAGGAGATCCAACGCATCAAGTCTATCAATCCCGATATAACCCACAGAGAAGCCTTCAGCGCAGCTGCCAAGAACTGGGCCCACTTCCCTCACATTCACTTTGGCCTCATGCCTGATCAGACCATGAAGAAGACAAACGTGCGCCAGCAGGAAGGAGAGGACGTCCACATGAAAGATGGTTTTTTTGCTTCGGCAAATGTTGGTGTGTCTCCGTACTAG 651 0.4977 MSSSSSTALSLDHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNVNMRGLLLPPPNQFHLSHSFYSPSHNLLEEIPNPTPNFLINQTTSSNDLSVPSRITADELPRPPLINRPPEKRQRVPSAYNRFIKEEIQRIKSINPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVRQQEGEDVHMKDGFFASANVGVSPY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0883 216 CDD HMG-box_SF 134 170 - -
Prci10g0883 216 Gene3D High mobility group box domain 125 198 IPR036910 -
Prci10g0883 216 PANTHER PROTEIN YABBY 6-RELATED 1 192 IPR006780 GO:0007275
Prci10g0883 216 FunFam Axial regulator YABBY 125 196 - -
Prci10g0883 216 Pfam YABBY protein 16 180 IPR006780 GO:0007275
Prci10g0883 216 SUPERFAMILY HMG-box 124 173 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0883 Prci-Chr10 5969392 5971988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0883 27 214 C2C2-YABBY Transcription Factor Family AT4G00180 59.330 2.42e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Prci10g0883 YABBY 2.2e-69 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0883 K25796 - vvi:100267708 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0883 10 5969392 5971988 Prci10g0883 10 5969392 5971988 ECH