Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0824 ATGGAGAGGCACAAATGCAAGCTTTGCTCTCGGACGTTCGCCAATGGCAGAGCCTTGGGTGGTCACATGAAAGCTCACTTAACTGCTCTCCCTCTTCCTCCCAAGCCCCAAACTCTGATCACTCCCTCAACAACTTCATTTTCATATTCCTCTTCCGACGAAGACGACGAAGAAGAAGTAGAAGTAGCACCTGCTTACGGAGAATCAGACGACAAGGCCTTGAGCTATGGGTTGAGGGAGAATCCCAGGAGAAGTTTCAGGTTCGCAGATCCTGAGTTCGCTTTCGCAGTTGATGCTGGCTCAGTCGTCCAAGATAGAGAAAGCGAGACCGAGTCAAAGAAGTCGACTCGCCGGCGATCCAAGCGAGCCCGAAAATCCACCGTCGGGGCAACCCAGAAATTTGAAGTGACCAAGGTCAGGTCAAATTTGACGGAGTCGCCGACGGAGCCTGAACCGGTGAGCTCGGTTTCTGATACTTCACCGGATGAAGACGTTGCCATGTGCCTCATGTTGCTTTCGAGGGACAGGTGGATGAGAAGCGTCGTCGAACAAGATCAAGTGGAAAGATCGAAGGGACCGGAAGAGATCAAGTTGAAGAGGAAGCACCAATCCGACAACACTAAGAAAACATCTCGATCTTCTCGAGCATTGGACACTCGCAATAGTACCTACTTTCCTGAGGAAGCAGAGGCCAAAATTGCAGGTAATGATAAAATCTTCGAATGCCCATTTTGTTACAAAGTTTTCGGCTCGGGACAAGCACTCGGTGGCCACAAGAGATCCCACCTCCTGCCATCTTCGTCGTCAACTGCTATCCGCTCTGCTAAATGTTCCATAGATCTCAACTTGCCAGCTCCGGCAGAAGAAGATGAACTCAGCGTGGTTTCTGATGCGTAA 897 0.5039 MERHKCKLCSRTFANGRALGGHMKAHLTALPLPPKPQTLITPSTTSFSYSSSDEDDEEEVEVAPAYGESDDKALSYGLRENPRRSFRFADPEFAFAVDAGSVVQDRESETESKKSTRRRSKRARKSTVGATQKFEVTKVRSNLTESPTEPEPVSSVSDTSPDEDVAMCLMLLSRDRWMRSVVEQDQVERSKGPEEIKLKRKHQSDNTKKTSRSSRALDTRNSTYFPEEAEAKIAGNDKIFECPFCYKVFGSGQALGGHKRSHLLPSSSSTAIRSAKCSIDLNLPAPAEEDELSVVSDA 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0824 298 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Prci10g0824 298 MobiDBLite consensus disorder prediction 130 161 - -
Prci10g0824 298 MobiDBLite consensus disorder prediction 33 74 - -
Prci10g0824 298 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Prci10g0824 298 MobiDBLite consensus disorder prediction 184 222 - -
Prci10g0824 298 Pfam C2H2-type zinc finger 240 262 - -
Prci10g0824 298 Pfam C2H2-type zinc finger 3 27 - -
Prci10g0824 298 MobiDBLite consensus disorder prediction 101 161 - -
Prci10g0824 298 SMART c2h2final6 240 262 IPR013087 -
Prci10g0824 298 SMART c2h2final6 4 26 IPR013087 -
Prci10g0824 298 SUPERFAMILY beta-beta-alpha zinc fingers 3 262 IPR036236 -
Prci10g0824 298 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 298 IPR044303 GO:0006355
Prci10g0824 298 MobiDBLite consensus disorder prediction 184 215 - -
Prci10g0824 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 262 IPR013087 -
Prci10g0824 298 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0824 Prci-Chr10 5608626 5609919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0824 2 293 C2H2 Transcription Factor Family AT1G02030 37.304 4.15e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci10g0824 zf-C2H2_6 3.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0824 - - qsa:O6P43_034089 311.997