Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0789 ATGGTTGAGAAGGACGACCTGGGTTTGAGTCTCAGCTTGAGCTTCCCCAACAAACCTCCTAATAATCCTCTGCACCTCAATCTCCTCCCTTCTTCTATTACTTCTCCTGCTTCCTCCAATCTTCCCAAACCCTCTTGGAACGACGCCTTCGCCTCCTCAGATCGGGATTCTGAGACATGCAGAGGCGAGGGAAGATCTTTCCTGCGAGGAATCGACGTGAACCGATTGCCTTCCGGGGTGGACTGCGAAGAGGAGGCCGGCGTTTCGTCTCCGAACAGCACGATATCGAGCGTCAGTGGCAAGAGAAGTGAGAGGGAGCCCAACGGAGAAGAGCATGACGCCGACAGAGACTGCTCTCGAGGAATCAGTGACGAAGAAGACGGCGAAACCTCCAGGAAAAAGCTCAGGCTTTCGAAAGATCAATCCGCTATTCTCGAGGAAAGCTTCAAAGAGCACAATACCCTCAATCCCAAGCAAAAGTTGGCACTCGCAAAGCAGCTGGGCCTTCGACCGAGACAAGTAGAGGTCTGGTTCCAGAACAGAAGGGCAAGGACCAAGCTGAAGCAAACTGAGGTAGACTGTGAGTTCTTGAAGAGATGCTGTGAGAATCTGACGGAGGAGAACAGGCGGTTGCAGAAGGAAGTTCAAGAGCTTAGAGCGTTGAAACTCTCTCCGCAACTATACATGCAAATGACCCCACCCACGACCCTCACCATGTGCCCGTCATGCGAGCGAGTCGCCGTGCCGCCCTACGCGGCCGCCGCCGCCGGTGGCAACCGCCCCCACCCGATAGCCCAGACGCACCCTCGGCCCATTCCCGTTGGCCCGTGGGCCACTGCCGCAGCTCCCATAGCTCACCGGCCCTTTGATTTGCTGCACCCTAGATCGTGA 891 0.56 MVEKDDLGLSLSLSFPNKPPNNPLHLNLLPSSITSPASSNLPKPSWNDAFASSDRDSETCRGEGRSFLRGIDVNRLPSGVDCEEEAGVSSPNSTISSVSGKRSEREPNGEEHDADRDCSRGISDEEDGETSRKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERVAVPPYAAAAAGGNRPHPIAQTHPRPIPVGPWATAAAPIAHRPFDLLHPRS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0789 296 MobiDBLite consensus disorder prediction 87 102 - -
Prci10g0789 296 CDD bZIP 181 220 - -
Prci10g0789 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 252 - -
Prci10g0789 296 MobiDBLite consensus disorder prediction 14 53 - -
Prci10g0789 296 MobiDBLite consensus disorder prediction 1 66 - -
Prci10g0789 296 Pfam Homeodomain 132 186 IPR001356 GO:0003677
Prci10g0789 296 ProSitePatterns 'Homeobox' domain signature. 163 186 IPR017970 GO:0000981|GO:0006355
Prci10g0789 296 MobiDBLite consensus disorder prediction 103 137 - -
Prci10g0789 296 Coils Coil 187 224 - -
Prci10g0789 296 MobiDBLite consensus disorder prediction 82 137 - -
Prci10g0789 296 SUPERFAMILY Homeodomain-like 122 189 IPR009057 -
Prci10g0789 296 ProSiteProfiles 'Homeobox' domain profile. 128 188 IPR001356 GO:0003677
Prci10g0789 296 FunFam Homeobox-leucine zipper protein 18 116 193 - -
Prci10g0789 296 CDD homeodomain 132 189 IPR001356 GO:0003677
Prci10g0789 296 Gene3D - 136 186 - -
Prci10g0789 296 SMART halz 188 231 IPR003106 GO:0006355|GO:0043565
Prci10g0789 296 SMART HOX_1 130 192 IPR001356 GO:0003677
Prci10g0789 296 Pfam HD-ZIP protein N terminus 1 106 IPR006712 GO:0005634
Prci10g0789 296 PRINTS Lambda-repressor HTH signature 159 168 IPR000047 GO:0003677
Prci10g0789 296 PRINTS Lambda-repressor HTH signature 168 184 IPR000047 GO:0003677
Prci10g0789 296 Pfam Homeobox associated leucine zipper 188 222 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0789 Prci-Chr10 5388998 5390916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0789 1 296 Homeobox Transcription Factor Family AT4G16780 65.000 4.51e-113 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci10g0789 HD-ZIP_N 7.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0789 K09338 - vvi:100246436 436.417