LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci10g0788	ATGCATCTTGAGGAATTGAAGGGAGAAGAGGTGGGAGGTGGAGAGGAAGAGAAATTATATCTCGGAAATGGTGTTATTGGTGGGGCAAATTTTTTCGTTTCAGATGCGAAAAGGGCTCTGGTTGGAGCGGGGGCTCGTGCTCTCTTCTATCCCACTCTGCTTTATAATGTCGTTAGGAATAAGATTCAGGCCGAGTTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTATTAGGTGCTGTTCCTTTCCCTATTGATGTTCCCCGCTTAAAGGAGCTGGGTGTTCGAGGAGTCATCACATTGAATGAGTCATATGAGACTTTGGTCTCAACCTCACTTTATCACGCTCATGGAATTGACCATCTCATGATTCCTACTAGAGATTACTATTTCGCACCTTCATTGCATGACATATGCTCTGCTGTAGACTTCATTCATGAAAATGCGTTGGCTGGACGGGTTACATATGTCCATTGTAAAGCTGGGCGCGGTCGTAGCACAACTGTTGTTATCTGTTACTTGGTGCATTACAAGCTTATGACACCTAGTGCTGCATATGATTATGTGAAGTCAATTCGACCAAGGGTTCTTCTGGCTTCCTCTCAGTGGCAAGCTGTTCAGGAATACTACCACCTTAGGGTTAGGAAAGCGATGGCCTATGCTCCCTCGGGTAACATAGTAATGAAGGCACCTGCAGGTTCACTAGACCTTGTAACATTTGATGACGGTTCTGTGGTGGTGGTAACGGAGTCAGATCTAGAAGGATACGAGGCCACTTTGGGAAGCAAGATATGGGCAAATGTGAGCGTAGTGTACCAGGTGCGGGTCGCTGGACAGGCAGCGTTGGCAGGAATATCATGCCTTTGGCTGAGATATGGTAGGCACCAGGAGGTTTCCACAGTCAAAGCGAGCAGCAGCAATCATTTGGGTGGCATTAGTGTTGATATCCATGTTTACTGA	960	0.4646	MHLEELKGEEVGGGEEEKLYLGNGVIGGANFFVSDAKRALVGAGARALFYPTLLYNVVRNKIQAEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVITLNESYETLVSTSLYHAHGIDHLMIPTRDYYFAPSLHDICSAVDFIHENALAGRVTYVHCKAGRGRSTTVVICYLVHYKLMTPSAAYDYVKSIRPRVLLASSQWQAVQEYYHLRVRKAMAYAPSGNIVMKAPAGSLDLVTFDDGSVVVVTESDLEGYEATLGSKIWANVSVVYQVRVAGQAALAGISCLWLRYGRHQEVSTVKASSSNHLGGISVDIHVY	319

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci10g0788	319	SMART	dsp_5	71	212	IPR020422	GO:0006470\|GO:0008138
	Prci10g0788	319	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	60	212	IPR029021	-
	Prci10g0788	319	CDD	PTPMT1	68	210	IPR044596	GO:0004721
	Prci10g0788	319	ProSitePatterns	Tyrosine specific protein phosphatases active site.	157	167	IPR016130	GO:0016311\|GO:0016791
	Prci10g0788	319	Pfam	Dual specificity phosphatase, catalytic domain	90	210	IPR000340	GO:0008138\|GO:0016311
	Prci10g0788	319	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	68	215	IPR020422	GO:0006470\|GO:0008138
	Prci10g0788	319	PANTHER	PHOSPHATIDYLINOSITOL PHOSPHATASE	19	290	-	-
	Prci10g0788	319	Gene3D	Protein tyrosine phosphatase superfamily	68	216	IPR029021	-
	Prci10g0788	319	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	136	204	IPR000387	GO:0016311\|GO:0016791
	Prci10g0788	319	FunFam	Dual specificity phosphatase domain protein	68	215	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci10g0788	Prci-Chr10	5376699	5380262	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci10g0788	25	319	Protein tyrosine phosphatase (PTP) family	AT2G35680	60.191	6.18e-126	362

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci10g0788	-		-	jre:108994353	456.447

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