Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0754 ATGGGCAAGCAAGGTCCTTGCTACCACTGTGGAGTTACAAGCACGCCACTTTGGCGCAATGGCCCACCAGAGAAACCAGTATTATGCAATGCATGTGGTTCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCATTACATGCTCGGACAGAAACTGATGATTTTGAGGATCAAAAGTTTCCAAGGGTAAAGAGCATATCACTAAATAGGAACAAAGAAGTGAAGTTGTCTAAACGAAAGCAGAACGAAGATAATTTATTAACTGGAGTGGCTGGCCTTGATTACAACCAAGGGTTCCGAAAGGCTACAGATGAAGATACAAGCAATAGATCAAGTTCAGGATCAGCTATCTCTAACTCAGAGAGCTGCGCTCAATTTGGTGGCACTGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAATGGTCTGGGATGCCATGGTGCCTTCAAAGAAGAGGACGTGTGTGGGTCGTCCAAAGCAATCTTCTGTTGAGAAGCTTACAAAAGATCTGTTCACTATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTCAAGAGGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGCGTTCTTATTAGGCACCCAAGCTCTATAGCACGTGAAGAAGAGTCTGAGGCCAGCTCTCTTTCAGTTGATAACAAACAGTGCCCAACCAGTGAGGCATATTCATGTTCTGGTACCGCTCATGTGCGTAATGGTTATGGCGGTTTCAATTTTCCATCTCAGGGAGTTCAAAAGATCAGGAGCTCTGCTGGCCAAGGAATGCTGCAAGAGCAACTTAAGAGGGACAAGACAAAACATGATAAGGCTCAAATCCTTGGAATTAAGTCACCACTGTGTTCTATAGATTTAAATGATGTCATTAACTATGATGAATTTATGAGAACCTTGAACAATGAAGAGCAGCAACAGTTACTCCAGTGTCTCAATGCAGTTGATACTACTAGACTTCCTGATAGCCTGAAAAGCATGTTTAGTAGCTCTCAGTTCAAGGAGAACTTGATTTATTTTCAGCAGCTTCTTGCAGAAGGTGTCTTTGACATCTCTTTATCAGGGACAAAGCCTGAAGACTGCAAGACTTTGAAAAGGCTTGCTTTATTCAATCTGTCAAAATCAAAATGGGTGGAACATTATAACTTACTGAAGAAACATAAGAACAGAGCTGGAAAATCTGTTGCTTTGGTTTCTTCTGGCACTGCATCTTGTAATGTTGCAAATGTCAAGAGATATCATGACAGCCAAAGAAAAACTTTATCAGAATTGAAGATAACAATGAGGAGTCCTAAAAGGGTGATGAAGGTTGGCTGTGAGGGCAAGGAAGCTGAAGAATATGGTTCTTGTTTCAGTCCAAAGAGCCTATTTGCTTTGCCTTCTGATGGCGAAGCCCCCATGCTGGATTCTTTCAATTTTGTTGAGGAGAGTGCTGATCAGGATTTGCTGCTAGAGGTGCCATCCAACGGTTCTTTCCCAGAGGCAGAACTCCTGCATCCAACTTTGAGCTTTGGTGCTCAAGCTTGCGCCAGTAGCAGCTCAGTATACCCTCATATTGTCCATCCTTGA 1617 0.4267 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTETDDFEDQKFPRVKSISLNRNKEVKLSKRKQNEDNLLTGVAGLDYNQGFRKATDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSMVWDAMVPSKKRTCVGRPKQSSVEKLTKDLFTILHEQQSYFSASSQEDLLFESETPMVSVEIGHGSVLIRHPSSIAREEESEASSLSVDNKQCPTSEAYSCSGTAHVRNGYGGFNFPSQGVQKIRSSAGQGMLQEQLKRDKTKHDKAQILGIKSPLCSIDLNDVINYDEFMRTLNNEEQQQLLQCLNAVDTTRLPDSLKSMFSSSQFKENLIYFQQLLAEGVFDISLSGTKPEDCKTLKRLALFNLSKSKWVEHYNLLKKHKNRAGKSVALVSSGTASCNVANVKRYHDSQRKTLSELKITMRSPKRVMKVGCEGKEAEEYGSCFSPKSLFALPSDGEAPMLDSFNFVEESADQDLLLEVPSNGSFPEAELLHPTLSFGAQACASSSSVYPHIVHP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0754 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Prci10g0754 538 MobiDBLite consensus disorder prediction 101 124 - -
Prci10g0754 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Prci10g0754 538 MobiDBLite consensus disorder prediction 110 124 - -
Prci10g0754 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 521 IPR044589 -
Prci10g0754 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Prci10g0754 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Prci10g0754 538 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Prci10g0754 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Prci10g0754 538 Gene3D - 290 382 IPR038108 -
Prci10g0754 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Prci10g0754 538 Pfam Asx homology domain 283 366 IPR028020 -
Prci10g0754 538 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0754 Prci-Chr10 5210376 5217325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0754 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.788 4.85e-166 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci10g0754 ASXH 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0754 - - gmx:100798504 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0754 10 5210376 5217325 Prci5g0444 5 5888220 5894533 CCT