Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0746 ATGGAACTTCATTCCAAACACCAAGTGGCCATTGTTTGGGTGATGATGTTCTTACCCGCTGCACTATGCTACTCTTACGGCTTCACTCCCTCCAGAGCTACCTATTATAGTGGCCACGGAAATCCAAGGGGAGCTTGTGGATATGGCTATTACGGCATAACTGCAAACAATGGGAGGGTTGCAGCCGTGTCCAGTAGTCTATGGAGAGGAGGCGCTGGATGCGGTGCTTGCTACCAAGTAAGGTGTAAGAATCCAAGATTATGCAACAGCTACGGCACGACGGTAGTGGCAGCAGACTACGGTGAAGGAGACAGAACAGACTTGATACTGAGTCCAAGTGCTTGGGCAGATCTGGGACGAAATCCAGGAGCATCGCAAGAGCTCAAGAAATACGGAGTCGTTGACATCGAATACAGGAGGGTGCCCTGCAGATTTGCTGGATATAACGTCCGTATCAAGATCCACGAGTCAAGCAGATACCCAGACTATCTCGCTCTTGTGATTCAATACGTGCCTGGAATGAGCGACGTCACTGCTGTTGAAATATATCAGAATGATCGTAGAGAATGGAGGCCCATGAGAAGAGCGTATGGGGCAGTGTTTGATATAGTTGGGGCCCCACATGGACCATTGATGCTGAGGCTGCAATTCAGTGGCAGAACAGGTTGGGTGCAGTCGACCAAGAGTGCGATTCCTGGTGATTGGAAGATCGGAGCGTCCTATGATTCTCAGGTTCATGTCTAA 744 0.4973 MELHSKHQVAIVWVMMFLPAALCYSYGFTPSRATYYSGHGNPRGACGYGYYGITANNGRVAAVSSSLWRGGAGCGACYQVRCKNPRLCNSYGTTVVAADYGEGDRTDLILSPSAWADLGRNPGASQELKKYGVVDIEYRRVPCRFAGYNVRIKIHESSRYPDYLALVIQYVPGMSDVTAVEIYQNDRREWRPMRRAYGAVFDIVGAPHGPLMLRLQFSGRTGWVQSTKSAIPGDWKIGASYDSQVHV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0746 247 Gene3D - 145 247 IPR036749 -
Prci10g0746 247 SMART dpbb_1 60 138 IPR007112 -
Prci10g0746 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 148 IPR007112 -
Prci10g0746 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Prci10g0746 247 Gene3D - 19 144 IPR036908 -
Prci10g0746 247 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Prci10g0746 247 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576|GO:0019953
Prci10g0746 247 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576|GO:0019953
Prci10g0746 247 PRINTS Major pollen allergen Lol pI signature 82 92 IPR005795 GO:0005576|GO:0019953
Prci10g0746 247 PRINTS Major pollen allergen Lol pI signature 219 236 IPR005795 GO:0005576|GO:0019953
Prci10g0746 247 PANTHER EXPANSIN-B3 18 246 - -
Prci10g0746 247 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
Prci10g0746 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Prci10g0746 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Prci10g0746 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Prci10g0746 247 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Prci10g0746 247 Pfam Lytic transglycolase 61 138 IPR009009 -
Prci10g0746 247 Pfam Expansin C-terminal domain 150 232 IPR007117 -
Prci10g0746 247 SUPERFAMILY Barwin-like endoglucanases 15 147 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0746 Prci-Chr10 5155574 5157297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0746 9 245 Expansin Gene Family AT4G17030 52.066 2.71e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0746 - - gmx:100779487 301.212