Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0744 ATGGAACTTCACTCTAAATACCAAGTTCCTCTTGTTTTGCTGCTGCTCTTACCTGCACTATGCCTGTCCCAAGGCTACACGTCCTCCAGAGCCACCTATTATAGTACCTCTGATGGCTATGGAACTCCAACCGGAGCTTGTGGATATGGCGATTACGGCAGAACTGTAAACTATGGGATGGTTGCTGGCGTGTCTGGGCTATGGAGAGGAGGCGCCGGCTGCGGTGCTTGCTACGAAGTAAGGTGCAAGGATTCAAAATTATGCAACCAGAACGGGCCTACGATAGTGGCGACAGACTTCGGTGCAGGAGACAGAACAGACTTTATAATGAGTCTGAATGGTTTCTTGAAGCTGGGACGGGACTCGAGTGCATCGCAAGAGCTCAAGAAATATGGCGTCGTTGACGTCGAATACAAAAGAGTACCCTGCACGCATGATGGCTCCAACGTGCTGATCAAAATCCACGAGTCCAGCAAATACCCAGACTACCTCGCTATCATCATTCTCTACGTGCCTGGAATGAAGGACGTCGTCGGCGTTGAGATATATGACGATTATAGCAAAGAATGGAGGGCCATGAGAAGAGCGTTCGGAGCAGTGTTTGACATAGTCAATGCGCCACGTGGACCATTCAAGCTGAGGCTGCAATTCAGTGGGAGCAAAGACTGGGTAGAGTCATCCAAGAGTGTGATTCCCGGTGACTGGAAGATCGGAGCGTCTTATGACTCTGGAATTCATGCCTAA 744 0.4987 MELHSKYQVPLVLLLLLPALCLSQGYTSSRATYYSTSDGYGTPTGACGYGDYGRTVNYGMVAGVSGLWRGGAGCGACYEVRCKDSKLCNQNGPTIVATDFGAGDRTDFIMSLNGFLKLGRDSSASQELKKYGVVDVEYKRVPCTHDGSNVLIKIHESSKYPDYLAIIILYVPGMKDVVGVEIYDDYSKEWRAMRRAFGAVFDIVNAPRGPFKLRLQFSGSKDWVESSKSVIPGDWKIGASYDSGIHA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0744 247 CDD DPBB_EXLB_N 27 143 - -
Prci10g0744 247 Pfam Expansin C-terminal domain 152 232 IPR007117 -
Prci10g0744 247 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
Prci10g0744 247 Gene3D - 145 247 IPR036749 -
Prci10g0744 247 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Prci10g0744 247 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Prci10g0744 247 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Prci10g0744 247 PRINTS Expansin/Lol pI family signature 229 243 IPR007118 GO:0005576
Prci10g0744 247 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Prci10g0744 247 Gene3D - 19 144 IPR036908 -
Prci10g0744 247 SMART dpbb_1 60 138 IPR007112 -
Prci10g0744 247 SUPERFAMILY Barwin-like endoglucanases 11 147 IPR036908 -
Prci10g0744 247 Pfam Lytic transglycolase 61 138 IPR009009 -
Prci10g0744 247 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 243 IPR007117 -
Prci10g0744 247 PANTHER EXPANSIN-B3 15 245 - -
Prci10g0744 247 SUPERFAMILY PHL pollen allergen 149 243 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0744 Prci-Chr10 5136446 5137897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0744 13 245 Expansin Gene Family AT4G17030 50.000 4.52e-80 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0744 - - gmx:100802855 289.271