Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0740 ATGGCAAACCCATCTTCATCAGCTCGCTCATCCGATTCCGGGCAGTTTACCTACTCCGACGGCTCCTACTTCCCCATGCCTTTTCATCTTCAGCAATCTGCTTCCGCGACGCCGTCTCACTATGCTGCGCCTTATGTGGCGGCGTCACCGGCGGTGCAAATTCCTCCTCAAGCGCCTACCGCCGCTGTGCCCGGTGTTTACGCTTATCCACAGTATCAGCAGGCGCAGCAGTTATTTCAACGGGATGCACAGACAATCACACCCGAGGCTCTTGAGAATGTCAAAGCAGCCATTGCTAACAGCGAGATCGAGCACAAGGCAGAGACAAAAAAGAAATCAATTCCTCGCAAAGCTGCAGGGCAATCATGGGAGGATCCTTCGCTGGCAGAGTGGCCAGAGAATGATCATCGGCTGTTCTGTGGTGATCTTGGTAACGAGGTAAATGACGATGTTCTTTCGAAAGCTTTTTCACGATTTCCTTCGTTTAACATGGCCAGAGTTGTAAGGGATAAGCGGAGTGGAAAAACAAAAGGCTATGGATTTGTTAGCTTCGCGGATCCTTCTGACCTTGCTGTTGCTCTCAAAGAGATGAATGGTAAATATGTCGGAAATAGGCCGATCAAATTGTGCAAGAGCAAGTGGAAGGAGAGAACGGATTATGAAGCTCTAGAGAAACACAAGAAACAATCTCGCAAGAAACCGAAACCTTCCAAAGTGGGTGTATTACATTACTGA 735 0.4884 MANPSSSARSSDSGQFTYSDGSYFPMPFHLQQSASATPSHYAAPYVAASPAVQIPPQAPTAAVPGVYAYPQYQQAQQLFQRDAQTITPEALENVKAAIANSEIEHKAETKKKSIPRKAAGQSWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYEALEKHKKQSRKKPKPSKVGVLHY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0740 244 Coils Coil 91 111 - -
Prci10g0740 244 SMART rrm1_1 137 210 IPR000504 GO:0003723
Prci10g0740 244 MobiDBLite consensus disorder prediction 228 244 - -
Prci10g0740 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 214 IPR000504 GO:0003723
Prci10g0740 244 FunFam RNA-binding protein 42 71 221 - -
Prci10g0740 244 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 224 - -
Prci10g0740 244 SUPERFAMILY RNA-binding domain, RBD 120 217 IPR035979 GO:0003676
Prci10g0740 244 CDD RRM_RBM42 130 212 IPR034215 -
Prci10g0740 244 MobiDBLite consensus disorder prediction 223 244 - -
Prci10g0740 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 138 208 IPR000504 GO:0003723
Prci10g0740 244 MobiDBLite consensus disorder prediction 107 129 - -
Prci10g0740 244 Gene3D - 71 210 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0740 Prci-Chr10 5110063 5111253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0740 138 229 Eukaryotic Initiation Factors Gene Family AT1G71770 29.348 1.09e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0740 K25079 - qsa:O6P43_011258 348.977