Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0661 ATGTATATTTCTGGGTGTAGAGTTTGGAAGAGAAAGACAACAGTTTTTAGGCTTTATACAATGCCAGTTCCACTTGCCCCCAATCCGACGCCCCCAGCTCCATATACTCCTCCGGCAAATGGGGCACAGAGTCAGCTTGTGTGTTCTGGGTGTAGAAACCTTCTAATGTATCCCGTTGGGGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGCACTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTCATGTACATCCGTGGAGCCACAAGTGTTCAATGCTCTTGCTGTCACACCGTCAATTTAGCTTTGGAAGCAAATCAGGTGGCGCATGTCAACTGTGGAAACTGCAGAATGCTATTGATGTACCAATATGGAGCAAGATCCGTGAAATGCGCTGTTTGCAATTTTGTGACATCAGTTGGGGTCTCAGCAAGCACGGCTGAGCAGAAGTTTAGTACCTAA 498 0.4819 MYISGCRVWKRKTTVFRLYTMPVPLAPNPTPPAPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSASTAEQKFST 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0661 165 Pfam LSD1 zinc finger 87 111 IPR005735 -
Prci10g0661 165 Pfam LSD1 zinc finger 48 72 IPR005735 -
Prci10g0661 165 Pfam LSD1 zinc finger 125 149 IPR005735 -
Prci10g0661 165 NCBIfam zinc finger domain, LSD1 subclass 122 152 IPR005735 -
Prci10g0661 165 NCBIfam zinc finger domain, LSD1 subclass 45 75 IPR005735 -
Prci10g0661 165 NCBIfam zinc finger domain, LSD1 subclass 84 113 IPR005735 -
Prci10g0661 165 SUPERFAMILY Multiheme cytochromes 48 146 IPR036280 -
Prci10g0661 165 PANTHER PROTEIN LSD1 33 75 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0661 Prci-Chr10 4449902 4452940 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Prci10g0661 zf-LSD1 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0661 - - qsu:112000975 269.626