Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci10g0661 | ATGTATATTTCTGGGTGTAGAGTTTGGAAGAGAAAGACAACAGTTTTTAGGCTTTATACAATGCCAGTTCCACTTGCCCCCAATCCGACGCCCCCAGCTCCATATACTCCTCCGGCAAATGGGGCACAGAGTCAGCTTGTGTGTTCTGGGTGTAGAAACCTTCTAATGTATCCCGTTGGGGCCACCTCTGTTTGTTGTGCTGTTTGCAATGCAGTCACAGCTGTGCCTCCTCCTGGCACTGAAATGGCCCAGTTGGTTTGTGGAGGCTGCCACACTTTACTCATGTACATCCGTGGAGCCACAAGTGTTCAATGCTCTTGCTGTCACACCGTCAATTTAGCTTTGGAAGCAAATCAGGTGGCGCATGTCAACTGTGGAAACTGCAGAATGCTATTGATGTACCAATATGGAGCAAGATCCGTGAAATGCGCTGTTTGCAATTTTGTGACATCAGTTGGGGTCTCAGCAAGCACGGCTGAGCAGAAGTTTAGTACCTAA | 498 | 0.4819 | MYISGCRVWKRKTTVFRLYTMPVPLAPNPTPPAPYTPPANGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSASTAEQKFST | 165 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci10g0661 | 165 | Pfam | LSD1 zinc finger | 87 | 111 | IPR005735 | - | |
Prci10g0661 | 165 | Pfam | LSD1 zinc finger | 48 | 72 | IPR005735 | - | |
Prci10g0661 | 165 | Pfam | LSD1 zinc finger | 125 | 149 | IPR005735 | - | |
Prci10g0661 | 165 | NCBIfam | zinc finger domain, LSD1 subclass | 122 | 152 | IPR005735 | - | |
Prci10g0661 | 165 | NCBIfam | zinc finger domain, LSD1 subclass | 45 | 75 | IPR005735 | - | |
Prci10g0661 | 165 | NCBIfam | zinc finger domain, LSD1 subclass | 84 | 113 | IPR005735 | - | |
Prci10g0661 | 165 | SUPERFAMILY | Multiheme cytochromes | 48 | 146 | IPR036280 | - | |
Prci10g0661 | 165 | PANTHER | PROTEIN LSD1 | 33 | 75 | IPR040319 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci10g0661 | Prci-Chr10 | 4449902 | 4452940 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Prci10g0661 | zf-LSD1 | 1e-11 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci10g0661 | - | - | qsu:112000975 | 269.626 |