Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0638 ATGGGTTTTGGTGATGCTGCTAGTAGCCCTGGCCTTCACCTTGTTCTAGGGTTAGGCATGACCGCTGCTCCATCCAAGGCTGACCATAATAGCAGGCCAACCAAGAGCTCCTGCAATTTCTCGCCAACAAGTAGTTGTGAGCCATCTTTAACCCTGGGTCTTCCGGCCGAGACTCCACAACAAGTCCCGAAAAAGATTGACGTGAACAAAAGTTGTGAGGATCCTCTTGAATTTTCTCGCCAAACATCACCTCACAGCGCCGTCTCATCCTTCTCCGGTGGGAGAGTGAAAAGGGAGAGAGATCTCTGCAACGATGAGGTCGAGGCGGCGGAGAGGATTTTTTCCTCGAGAAGGAGCGACCAAGACGAAGACGGAACTAATGCCAGAAAGAAGCTCAGACTCACCAAAGAACAATCCGCCTTGCTAGAGGAGAGCTTCAAACAAAATAGCACTCTCAATCCTAAGCAGAAGCAAGCTTTAGCCAGGCAGCTAAATCTGAGGCCAAGACAAGTTGAAGTATGGTTCCAAAATCGGCGAGCCAGGACGAAGCTGAAGCAGACGGAGGTGGACTGCGAATTCTTAAAGAAATGCTGCGAGACGCTGACGGATGAAAACAAGAGGCTGCAGAAGGAGGTGCACGAACTGAAGGCGCTGAAGCTTGCCCAACCTCTGTACATGGCTATGCCTGCGGCCACCCTGAGCATGTGCCCGTCTTGTGAGAGGCAGGGCGGTGTCGCCGGCGACGGCGCTTCTAACAAGAACGTCTTCTCAGTGACACCGAAGCCTCATTTCTACACGCCCTTCCCCAATCCTTCCGCGGCATGTTGA 828 0.5254 MGFGDAASSPGLHLVLGLGMTAAPSKADHNSRPTKSSCNFSPTSSCEPSLTLGLPAETPQQVPKKIDVNKSCEDPLEFSRQTSPHSAVSSFSGGRVKRERDLCNDEVEAAERIFSSRRSDQDEDGTNARKKLRLTKEQSALLEESFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENKRLQKEVHELKALKLAQPLYMAMPAATLSMCPSCERQGGVAGDGASNKNVFSVTPKPHFYTPFPNPSAAC 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0638 275 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Prci10g0638 275 MobiDBLite consensus disorder prediction 75 90 - -
Prci10g0638 275 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Prci10g0638 275 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Prci10g0638 275 MobiDBLite consensus disorder prediction 75 95 - -
Prci10g0638 275 SMART HOX_1 127 189 IPR001356 GO:0003677
Prci10g0638 275 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Prci10g0638 275 MobiDBLite consensus disorder prediction 27 56 - -
Prci10g0638 275 CDD homeodomain 129 186 IPR001356 GO:0003677
Prci10g0638 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 13 251 - -
Prci10g0638 275 MobiDBLite consensus disorder prediction 22 63 - -
Prci10g0638 275 Coils Coil 191 218 - -
Prci10g0638 275 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Prci10g0638 275 Gene3D - 121 190 - -
Prci10g0638 275 SUPERFAMILY Homeodomain-like 118 186 IPR009057 -
Prci10g0638 275 FunFam Homeobox-leucine zipper protein 18 115 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0638 Prci-Chr10 4234341 4235994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0638 1 275 Homeobox Transcription Factor Family AT4G37790 57.785 5.89e-96 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Prci10g0638 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0638 K09338 - jre:109019457 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0638 10 4234341 4235994 Prci5g0355 5 4793668 4795190 CCT