Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0606 ATGGGGGCTCCAAAGCAAAAATGGACTGCTGAAGAAGAAGCGGCACTGAAAGCTGGAGTAATGAAACATGGGGCAGGAAAGTGGCGCACAATACTTACAGACCCAGAGTTCAGTGCTATTTTGCGCATGCGTTCAAATGTAGATCTGAAGGATAAATGGAGGAATATAAATGTGACTGCAATATGGGGATCCAGACAGAAGGCAAAACTTGCACTTAAAAGGAACCTACCAGCCCCCAAAAATGATAACAACCATATGGCCCTGAGTACTGCAGTTCAACATGGTGAAGAAGTTCTTGATACTAAGCCTCTAGCAGTCGCTGGTGGAATGTCACAGTCTGCTAATCCAAAAGAACAAATATCTAGGTTGGATAATCTTATATTAGAGGCTATTATCAATTTGAAGGAGCCAAAGGGTACTGACAGGGCTGCTATTGCTGCTTACATAGAGGAGCATTACTGTTCTCCACCGAACCTCAGAAAGTTATTGTCAACAAAACTGAAGCATATGGTGGCTAGTGGCAAATTGACTAAGGTAAAACACAAGTACAGGATCGCTCAAAGTTCTGCAATCTCTGAGAAAAGAAGATACTCTAATTTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAGCGGAGAAGACCAATGTCAACATCCTTTCAAAATCCCAGATTGACGCAGAGCTATCAAAAATGAAGGGCGTGACAGCCCAAGAAGCTGCAGCAGCAGCTGCAAAGGCAGTTGCTGAAGCAGAAGCTGCAATTGCTGAGGCAGAGGCAGCAGCTAGGGAGGCAGAGGCAGCAGAAGCTGAAGCTGAGGCCGCACAAGTGTTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAGAACACTGCAAATTTGA 885 0.4475 MGAPKQKWTAEEEAALKAGVMKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKNDNNHMALSTAVQHGEEVLDTKPLAVAGGMSQSANPKEQISRLDNLILEAIINLKEPKGTDRAAIAAYIEEHYCSPPNLRKLLSTKLKHMVASGKLTKVKHKYRIAQSSAISEKRRYSNLLLLEGRPKDSPKAEKTNVNILSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEAAIAEAEAAAREAEAAEAEAEAAQVFAKAAMKALKCRTLQI 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0606 294 Coils Coil 242 279 - -
Prci10g0606 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Prci10g0606 294 Gene3D - 117 196 IPR036388 -
Prci10g0606 294 Pfam linker histone H1 and H5 family 124 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0606 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Prci10g0606 294 CDD H15 125 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0606 294 CDD SANT_TRF 6 57 - -
Prci10g0606 294 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Prci10g0606 294 SUPERFAMILY Homeodomain-like 2 67 IPR009057 -
Prci10g0606 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Prci10g0606 294 SUPERFAMILY "Winged helix" DNA-binding domain 118 196 IPR036390 -
Prci10g0606 294 Gene3D - 2 59 - -
Prci10g0606 294 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0606 294 PANTHER SINGLE MYB HISTONE 4 1 290 IPR044597 GO:0003691
Prci10g0606 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 119 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0606 294 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0606 Prci-Chr10 3985306 3990119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0606 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 57.679 6.67e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci10g0606 Linker_histone 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0606 K09422 - gmx:778165 394.815