Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0552 ATGCCTCCCCAAGATCACGACCACGAACAACCACTTTTAGTGGACTCTATCCCTGACAAACAAACAGCCGAAGCCGCTTACGATTCCTCCGAGAAAGTTGTGGTCGTCGGAATTGATGAGTCCAACACTGACTGCGACGACTCGGATCGTGTCCCGCCGTTTTCATGGAAGAAGCTATGGCTCTTCACTGGCCCTGGTTTCCTTATGAGCATTGCTTTTCTCGATCCTGGAAATCTTGAGGGAGATCTTCAGGCTGGCGCAATTGCTGGCTATTCCCTCTTATGGCTTCTCATGTGGGCTACGGCTATGGGGCTTCTGGTTCAGCTTTTGGCTGCACGGCTAGGAGTGGTGACTGGGAAGCATCTGGCTGAACTCTGCAGGGAGGAGTATCCAACTTGGGCGAGGATGATTCTGTGGGTTATGGCGGAGTTGGCTCTGATTGGGTCTGACATTCAAGAGGTTATTGGGAGCGCTATCGCTATCAGAATTCTCAGTAACGGTATTGTACCCCTTTGGGCGGGGGTCATCATCACAGCTTGTGACTGTTTTATTTTCCTATTTCTTGAGAACTACGGCGTGAGGAAATTGGAAGCATTTTTTGCTGTTCTCATTGGTTTAATGGCCCTCTCATTTGCGTGGATGTTTGGTGAAACAAAGCCTAGCGGCAAAGATCTTCTTCTCGGTATTTTGGTTCCGAAACTTAGCTCCAGAACAATACAGAAGGCTGTTGGAGTTGTGGGTTGCATTATTATGCCTCACAATGTATTTTTGCACTCTGCACTTGTTCAGTCAAGACAAGTTGAGCAGGGCAAGAAAGGCCGAGTTCAGGAAGCGCTTAACTATTATTCTATAGAGTCAACTGCTGCCCTTATTATCTCCTTTATCATTAATGTATTTGTCACGACTGTGTTTGCAAAGAGTTTTTATGGTACTGACCTCGCAAATAGCGTTGGTCTTGTGAATGCTGGCCAGTATCTTGAAGAAAAGTATGGAGGTGGACTTCTTCCAATCTTATATATATGGGGTATTGGGTTATTAGCAGCTGGTCAAAGTAGCACTATTACTGGGACTTATGCTGGACAGTTTATAATGGGGGGTTTTCTTAATTTAAGGTTGAAAAAATGGATGAGGTCATTAATTACACGAAGTTGTGCTATCATTCCAACTGTGACAGTTGCTCTTGTCTTTGAAACATCAGAGGACTCATTAGATGTTCTAAATGAATGGCTTAATGTTCTCCAATCAATTCAAATCCCCTTTGCACTCATTCCCTTGCTCTTTTTGGTGTCCAAGGAGCACATAATGGGCGCTTTCAGAATTGGCCCTGTCCTCAAGATCATCGCATGGTTTGTAGCTGCTCTAGTGATAATGATCAATGGGTATCTTATGCTAGAATTCTTCAACTCTGAGGTCAATGGAGTAATGTTTGGTGCTGTTGTGTGCGCTTTTACGGCTGCATACGTTGCATTTATACTTTACCTCATTTCAAGGGCCATCACCTTTTCCCCTGCGCAAAGTTCATTACAATCGAAGATGATTACTGACTCACAGAATTAA 1557 0.4451 MPPQDHDHEQPLLVDSIPDKQTAEAAYDSSEKVVVVGIDESNTDCDDSDRVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLAARLGVVTGKHLAELCREEYPTWARMILWVMAELALIGSDIQEVIGSAIAIRILSNGIVPLWAGVIITACDCFIFLFLENYGVRKLEAFFAVLIGLMALSFAWMFGETKPSGKDLLLGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSRQVEQGKKGRVQEALNYYSIESTAALIISFIINVFVTTVFAKSFYGTDLANSVGLVNAGQYLEEKYGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWMRSLITRSCAIIPTVTVALVFETSEDSLDVLNEWLNVLQSIQIPFALIPLLFLVSKEHIMGAFRIGPVLKIIAWFVAALVIMINGYLMLEFFNSEVNGVMFGAVVCAFTAAYVAFILYLISRAITFSPAQSSLQSKMITDSQN 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0552 518 Hamap Divalent metal cation transporter MntH [mntH]. 46 467 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 242 265 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 411 430 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 168 187 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 193 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 138 164 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 349 368 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PRINTS Natural resistance-associated macrophage protein signature 377 394 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 50 501 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 Pfam Natural resistance-associated macrophage protein 80 441 IPR001046 GO:0016020|GO:0030001|GO:0046873
Prci10g0552 518 NCBIfam Nramp family divalent metal transporter 64 433 - -
Prci10g0552 518 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 57 435 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0552 Prci-Chr10 3626747 3630334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0552 3 503 Inorganic Solute Cotransporters AT2G23150 77.515 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0552 K21398 - qsa:O6P43_024584 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0552 10 3626747 3630334 Prci5g0256 5 3617130 3620329 CCT
Prci10g0552 10 3626747 3630334 Prci10g0552 10 3626747 3630334 ECH