Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0527 ATGAATACGGTCGCTTCCAGGAAGGATATGGACCGGATTAAGGGTCCCTGGAGCCCCGAAGAGGACGACGCCTTGCAGAAGCTTGTCGACAAGCATGGCCCCAGGAATTGGTCCTTGATCAGCAGGTCCATTCCCGGTCGATCCGGCAAGTCTTGCAGGCTTCGCTGGTGCAATCAGCTCTCTCCCCAGGTCGAGCACCGTGCATTCACGCCAGAAGAGGATGATACCATCATCAGGGCTCATGCCCGCTTTGGCAATAAATGGGCCACCATCGCTCGCCTCCTCTCCGGCCGAACTGATAACGCAATCAAGAACCACTGGAACTCTACCTTGAAGCGCAAGTGCGCCTCCATGATGATCGATGATGCCGGCGCTGTGGGTGGATTCGATGGCAGTTTTAGCCCTCAGCCGCTCAAGAGGTCTGTCAGTGCCGGTGCCGCTGTACCGGTATCCACTGGGTTGTGCATGAACCCGCCCACACCGGGTAGCCCGTCCGGGTCGGATGTGAGCGAGTCCAGTGTTCCCGTTGCGTCTTCTTCTCAAGTCTATCGACCTGTCCCCAGAACCGGCGGAGTTCTGCCTCCCGTAGAAACGACGTCATCTTCCAATGACCCGCCTACGTCATTATCGCTGTCGCTTCCGGGCGTGGACTCTTCCGAAGTCTCCAATCGGCCTGCAGACACAACACATGCTGCACTACCGGCCAACAGTACGCGCTTATTATCCGCAACGGCACTGACGGCTGCTTCGACTCTCACGCCCACCCCACCTCCGGCTCCGGCATCCGTTCCGATGTCGGTGCCGCAGCAGGTTCATTCGGGTAGGGATGATCGAGGATGCGAGAGGGGTCCGTCGGCGGCGAATCAGAATGGGTTCTTAGCTTTCAATTTCAGCGCAGAGTTGCTAGCTGTGATGCAAGACATGATAAGGAAGGAGGTAAGGAGTTATATGGCGGGGTTGGAGCAGCAGAATGGGGTGTGTTTTCAGACAGCTGATGGATTTCGAAACGCTTCGGTGAAGCGTATTGGAATTAGCAGGATCGATTTATGA 1050 0.5667 MNTVASRKDMDRIKGPWSPEEDDALQKLVDKHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMIDDAGAVGGFDGSFSPQPLKRSVSAGAAVPVSTGLCMNPPTPGSPSGSDVSESSVPVASSSQVYRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSSEVSNRPADTTHAALPANSTRLLSATALTAASTLTPTPPPAPASVPMSVPQQVHSGRDDRGCERGPSAANQNGFLAFNFSAELLAVMQDMIRKEVRSYMAGLEQQNGVCFQTADGFRNASVKRIGISRIDL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0527 349 Gene3D - 67 123 - -
Prci10g0527 349 Gene3D - 13 65 - -
Prci10g0527 349 MobiDBLite consensus disorder prediction 194 235 - -
Prci10g0527 349 MobiDBLite consensus disorder prediction 1 20 - -
Prci10g0527 349 MobiDBLite consensus disorder prediction 153 235 - -
Prci10g0527 349 FunFam MYB transcription factor 14 65 - -
Prci10g0527 349 Pfam Myb-like DNA-binding domain 17 74 - -
Prci10g0527 349 CDD SANT 68 111 IPR001005 -
Prci10g0527 349 ProSiteProfiles Myb-like domain profile. 9 60 IPR001005 -
Prci10g0527 349 SMART sant 65 113 IPR001005 -
Prci10g0527 349 SMART sant 13 62 IPR001005 -
Prci10g0527 349 FunFam Transcription factor MYB44 68 114 - -
Prci10g0527 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 64 IPR017930 -
Prci10g0527 349 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Prci10g0527 349 PANTHER MYB PROTEIN-RELATED 14 214 - -
Prci10g0527 349 MobiDBLite consensus disorder prediction 250 285 - -
Prci10g0527 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 115 IPR017930 -
Prci10g0527 349 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Prci10g0527 349 CDD SANT 16 58 IPR001005 -
Prci10g0527 349 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0527 Prci-Chr10 3484987 3486682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0527 6 348 MYB Transcription Factor Family AT4G37260 49.587 1.35e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci10g0527 Myb_DNA-bind_6 8.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0527 K09422 - qsa:O6P43_024595 480.33