Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0490 ATGACAAGCTCAGTGGAGGAGTCCCACGAGGGTGTCTCCAAAAGGCGTTACTCTCTCGCACTCTCGCCATATTCCCCATTCCTCATGAAGATTCACTCTCTCTCTCTCCCTTTTGATTCAGATTTTACCCAAACTCGCCGAGGGGGAGAGATGGATGATGAAGCTGCGGAAGGTGGGGTGAGAGACAGAGAGACGCCGACCACGAAAAGAGGGGCAGTTGAAGGAGAGAGAAGATACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAGATTCGAGAGCCCAATAAACGCTCCAGGATTTGGCTCGGCTCCTACTCCACGCCCGTCGCAGCGGCGCGGGCTTACGACACCGCCGTTTTCTATCTCAGGGGACCATCGGCCCGCCTCAATTTCCCCGACCTTTTAGAAGGCGGCGGCGTTGGCGGCTGCGACTGCGACATGTCGGCTGCTTCGATTAGGAAGAAAGCGACGGAGGTTGGTGCCAGGGTCGACGCGCTCCAGGCCGCTCGCCACCATCACCTCCATGCGTCGGTGGCTCCAGAGCTCATCTCACGCAGCGCAGGAGCCAGAACCGGCTCCGGGGAGTTTTTGGAGCGGGTTGATCTCAACAAGATACCGGAACCCGAGAATTCGGACTGCGACTGCGAATGA 660 0.5803 MTSSVEESHEGVSKRRYSLALSPYSPFLMKIHSLSLPFDSDFTQTRRGGEMDDEAAEGGVRDRETPTTKRGAVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLEGGGVGGCDCDMSAASIRKKATEVGARVDALQAARHHHLHASVAPELISRSAGARTGSGEFLERVDLNKIPEPENSDCDCE 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0490 219 PRINTS Ethylene responsive element binding protein signature 79 90 IPR001471 GO:0003700|GO:0006355
Prci10g0490 219 PRINTS Ethylene responsive element binding protein signature 117 137 IPR001471 GO:0003700|GO:0006355
Prci10g0490 219 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Prci10g0490 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 64 215 - -
Prci10g0490 219 SMART rav1_2 78 141 IPR001471 GO:0003700|GO:0006355
Prci10g0490 219 FunFam Ethylene-responsive transcription factor 2 77 136 - -
Prci10g0490 219 Pfam AP2 domain 78 127 IPR001471 GO:0003700|GO:0006355
Prci10g0490 219 SUPERFAMILY DNA-binding domain 78 136 IPR016177 GO:0003677
Prci10g0490 219 Gene3D AP2/ERF domain 77 136 IPR036955 GO:0003700|GO:0006355
Prci10g0490 219 MobiDBLite consensus disorder prediction 45 69 - -
Prci10g0490 219 ProSiteProfiles AP2/ERF domain profile. 78 135 IPR001471 GO:0003700|GO:0006355
Prci10g0490 219 MobiDBLite consensus disorder prediction 44 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0490 Prci-Chr10 3344277 3345294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0490 58 219 AP2-EREBP Transcription Factor Family AT5G67190 56.216 2.91e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci10g0490 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0490 K09286 - qsa:O6P43_024615 224.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0490 10 3344277 3345294 Prci5g0228 5 3205877 3206678 CCT
Prci10g0490 10 3344277 3345294 Prci10g0490 10 3344277 3345294 ECH