Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0487 ATGTGGGATCTGAATGATTCGCCCGATTGGCGGAGAAAGGACGAGGAATCCGAAGGCTGTTCTTCCTTGAAAACGTCCATGGACGGAGACGAGGACAAAGGGAAAAGGGTCGGATCTATGTCGAATTCAAGCTCATCTGCGGTGGTAATCGAGGACGGGTCGGAAGAGGAGGACGGCGGGAGGAGCAGAACATTGAAGAAGAAAAGCAGCACGATATTCGGGTTCTGTGTGACCCAGGACGAGTCCATGGATAGTGACCCTCCCGTGACCCGGCAGTTTTTCCCGGTGGAGGAGGAGGCGGAGGCAGTGTCTTCGGGCGGAGGGAGCGCGGCCTTCCCTCGGGCCCACTGGGTGGGCGTGAGATTCTGTCAGCCGGAAGCAGTTGGCGGTGCTGGTGGAGGAGGAAAATCAGTGGAAGTGTCGTCGCAGCCGATGAAGAAGAGTCGGCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGGGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCACATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTAGAGGCCGATATCAACTTCAACATTGAAGACTACGAAGAGGACTTGAAGCAGATGAGCAATTTAACAAAGGAAGAGTTTGTGCACGTACTTCGTCGACAAAGCACTGGGTTCCCCAGAGGAAGCTCCAAATATAGAGGCGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTACGTTTATCTTGGTTTGTTTGACACGGAGATTGAAGCTGCGAGGGCATATGACAAAGCAGCTATAAAATGTAACGGCAAAGAGGCCGTCACTAATTTCGATCCCAGCATCTACGAGAACGAGCTTAATTCTGAATCCTCGGGTAGCGCTGCGGATCACAATCTGGATTTAAGTTTGGGCAATTCGAGCTCAAAGCAAGGCAATAGCCTGGCATTGGGGAACGATCATCACCACATGGCATCCGAATTTAGTTGGAGGAACAATGGAGGATTCAGGCCTAAGTTGACACTGCTGGACGGGCACGGCGAGAGTGAAGCGTTGAGGCTGGTGGGTCAAACCCAGCTTCAATCTCCAGCACCCAGAGAAATGCAAAGATACGGTGCCTGCAGGACGTCTAGAGAGCCTCAAATGCTCCACAGTTTTGCTCCATCACATCTTCACCCACCAAGTTTTCAATTTCCGAGCAGCAGCAACGGAGGGCGTATAGGGAGTGATCTTTCACTGTCAATGAGCGAGCATCATCAGCAATCTGGGCCGCCGCCGCCTCCTCCTCATCAGCCTCATTATATAGCAGCTGCTGCAGCATCATCAGGATTCCCAACGCAGATTAATAGACTTTCCCAAGGATGGCTGCAGAAAAATGGGTTTCACACCCTCACGAGACCCAACTGA 1491 0.5191 MWDLNDSPDWRRKDEESEGCSSLKTSMDGDEDKGKRVGSMSNSSSSAVVIEDGSEEEDGGRSRTLKKKSSTIFGFCVTQDESMDSDPPVTRQFFPVEEEAEAVSSGGGSAAFPRAHWVGVRFCQPEAVGGAGGGGKSVEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGSAADHNLDLSLGNSSSKQGNSLALGNDHHHMASEFSWRNNGGFRPKLTLLDGHGESEALRLVGQTQLQSPAPREMQRYGACRTSREPQMLHSFAPSHLHPPSFQFPSSSNGGRIGSDLSLSMSEHHQQSGPPPPPPHQPHYIAAAAASSGFPTQINRLSQGWLQKNGFHTLTRPN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0487 496 MobiDBLite consensus disorder prediction 1 37 - -
Prci10g0487 496 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Prci10g0487 496 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Prci10g0487 496 MobiDBLite consensus disorder prediction 326 344 - -
Prci10g0487 496 CDD AP2 158 215 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 MobiDBLite consensus disorder prediction 326 346 - -
Prci10g0487 496 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Prci10g0487 496 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Prci10g0487 496 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 390 - -
Prci10g0487 496 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Prci10g0487 496 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 MobiDBLite consensus disorder prediction 1 65 - -
Prci10g0487 496 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Prci10g0487 496 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 MobiDBLite consensus disorder prediction 418 462 - -
Prci10g0487 496 MobiDBLite consensus disorder prediction 422 448 - -
Prci10g0487 496 MobiDBLite consensus disorder prediction 129 159 - -
Prci10g0487 496 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Prci10g0487 496 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0487 Prci-Chr10 3316101 3319941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0487 1 495 AP2-EREBP Transcription Factor Family AT4G36920 54.475 7.34e-140 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Prci10g0487 AP2 3.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0487 K09284 - gmx:100792442 656.751