Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0486 ATGTGGGATCTGAATGATTCGCCCGATTGGCGGAGAAAGGACGAGGAATCCGAAGGCTGTTCTTCCTTGAAAACGTCCATGGACGGAGACGAGGACAAAGGGAAAAGGGTCGGATCTATGTCGAATTCAAGCTCATCTGCGGTGGTAATCGAGGACGGGTCGGAAGAGGAGGACGGCGGGAGGAGCAGAACATTGAAGAAGAAAAGCAGCACGATATTCGGGTTCTGTGTGACCCAGGACGAGTCCATGGATAGTGACCCTCCCGTGACCCGGCAGTTTTTCCCGGTGGAGGAGGAGGCGGAGGCAGTGTCTTCGGGCGGAGGGAGCGCGGCCTTCCCTCGGGCCCACTGGGTGGGCGTGAGATTCTGTCAGCCGGAAGCAGTTGGCGGTGCTGGTGGAGGAGGAAAATCAGTGGAAGTGTCGTCGCAGCCGATGAAGAAGAGTCGGCGAGGACCGAGGTCAAGGAGCTCTCAGTATAGGGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCACATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACGGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGGGGAGTAGAGGCCGATATCAACTTCAACATTGAAGACTACGAAGAGGACTTGAAGCAGATGAGCAATTTAACAAAGGAAGAGTTTGTGCACGTACTTCGTCGACAAAGCACTGGGTTCCCCAGAGGAAGCTCCAAATATAGAGGCGTCACTTTGCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTACGTTTATCTTGGTTTGTTTGACACGGAGATTGAAGCTGCGAGGGCATATGACAAAGCAGCTATAAAATGTAACGGCAAAGAGGCCGTCACTAATTTCGATCCCAGCATCTACGAGAACGAGCTTAATTCTGAATCCTCGGGTAGCGCTGCGGATCACAATCTGGATTTAAGTTTGGGCAATTCGAGCTCAAAGCAAGGCAATAGCCTGGCATTGGGGAACGATCATCACCACATGGCATCCGAATTTAGTTGGAGGAACAATGGAGGATTCAGGCCTAAGTTGACACTGCTGGACGGGCACGGCGAGAGTGAAGCGTTGAGGCTGGTGGGTCAAACCCAGCTTCAATCTCCAGCACCCAGAGAAATGCAAAGATACGGTGCCTGCAGGACGTCTAGAGAGCCTCAAATGCTCCACAGTTTTGCTCCATCACATCTTCACCCACCAAGTTTTCAATGTGTTGTCCCTCTGGAAATGCAGTTTCCGAGCAGCAGCAACGGAGGGCGTATAGGGAGTGATCTTTCACTGTCAATGAGCGAGCATCATCAGCAATCTGGGCCGCCGCCGCCTCCTCCTCATCAGCCTCATTATATAGCAGCTGCTGCAGCATCATCAGGATTCCCAACGCAGATTAATAGACTTTCCCAAGGATGGCTGCAGAAAAATGGGTTTCACACCCTCACGAGACCCAACTGA 1515 0.5188 MWDLNDSPDWRRKDEESEGCSSLKTSMDGDEDKGKRVGSMSNSSSSAVVIEDGSEEEDGGRSRTLKKKSSTIFGFCVTQDESMDSDPPVTRQFFPVEEEAEAVSSGGGSAAFPRAHWVGVRFCQPEAVGGAGGGGKSVEVSSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGSAADHNLDLSLGNSSSKQGNSLALGNDHHHMASEFSWRNNGGFRPKLTLLDGHGESEALRLVGQTQLQSPAPREMQRYGACRTSREPQMLHSFAPSHLHPPSFQCVVPLEMQFPSSSNGGRIGSDLSLSMSEHHQQSGPPPPPPHQPHYIAAAAASSGFPTQINRLSQGWLQKNGFHTLTRPN 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0486 504 MobiDBLite consensus disorder prediction 1 37 - -
Prci10g0486 504 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 MobiDBLite consensus disorder prediction 326 344 - -
Prci10g0486 504 CDD AP2 158 215 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 MobiDBLite consensus disorder prediction 326 346 - -
Prci10g0486 504 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Prci10g0486 504 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 386 - -
Prci10g0486 504 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Prci10g0486 504 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Prci10g0486 504 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Prci10g0486 504 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Prci10g0486 504 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 MobiDBLite consensus disorder prediction 1 65 - -
Prci10g0486 504 MobiDBLite consensus disorder prediction 437 456 - -
Prci10g0486 504 MobiDBLite consensus disorder prediction 129 159 - -
Prci10g0486 504 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
Prci10g0486 504 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 MobiDBLite consensus disorder prediction 437 470 - -
Prci10g0486 504 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Prci10g0486 504 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0486 Prci-Chr10 3316101 3319971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0486 1 342 AP2-EREBP Transcription Factor Family AT4G36920 68.750 3.44e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Prci10g0486 AP2 3.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0486 K09284 - qsa:O6P43_024617 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0486 10 3316101 3319971 Prci5g0225 5 3158055 3161148 CCT
Prci10g0486 10 3316101 3319971 Prci10g0486 10 3316101 3319971 ECH