Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0466 ATGATGAACCATCAAGGTCAAAACAATTCTAATGAAAGCATCCAAAGTGTGGCCAACCATTGGGAATCAAGTGAAGCCCTGAGAGTTGCTTCATCAAGTTCTTGTACTGGAAGCATTCAAAGTTTCCCAAATAGTTTTAATCCAAATTTTCTCCCTTATCAAGAGCATCTTAATATTGTTCGAAGCAATGATCGCGGTGTAGGTGTTATCCATCATAACCTGGACTTAAATACAGAATATGTGGAAAATAATCATGAAACCAATCAGAATGTGTCGGTAGGTTTGTGCCTACATTCATTTGCACCTGATGTACCAGACAATCAGAGTGACACTAATTTATCTGATTTAATGGCAATTGATGGTGGAAGCTCATATGTAGTGGATCGACAAGGAGTGGATAACTGCTTAGTGAACATGAGTTATTTGTCCTCCAATAGATCTCCTGAACATGCTTCTAGAGAAGTGTTAACTGGTGAAAGTTCTAGATCAGCTGTGCAAGCTAGGATCCCCATATTGCAGGCTGCTACTGTCCAAGTCAATGCCAGTAACAGCTTGGACATAATAGCTCCTTATATTAGTGCCGCAAATATCCGCCAACAACAATTTGATGCTGAATTTAGTCATGAGACTATAAGGCCAGTTTCTAACATGCGACTATTGAATGAAGCTAGGCATGGCTCTGCTAATAGTTCTCTATTTTCATTTGAGGCAGGTAGTAACAGCTTGAACATAATAGCTCCTTGTATTAGCGCTTCAAATATCCGCCAACAACAGTTTGATGCTGAATTCGGTCATGAGACTATTAGGCCAGTTTCTAACATGCATCAATTGAATGAAGCTAGGCATGGTTCTGCTAATAGTTCTCTATTTTCATTTGAGGCAGGAATTGATCACGGTATCACCAGGCCAGTTTATAACATGCTACGCTTAAGTCGTGCTAGACAAATTAGACACTTTCAAAGCAATAATCACACAGATGCTAGTCCTCTAGCCTCTGTACCATCCAGCTATTTGTCAATGGGGCAGGGAAGGAACTTTCATAGTCTTTTGTATGGACAAACACCTCAGTATCACCAACGAGACCATCCTCATTTCTTTATCCAAGCACAAGCTTCAGTTGGTGTGGTTCCCTACGTGCAGCCATTTGTGCAATTTCCTAATTTTCATGAGATTCTAGTGCCTGCCCGTTGGTTTAATGTTATGGGGCCAAGAAGCATTGCACCTCCATTTTCGCCTGTTTATATCATTCCAGGAGGCAGAAACCCTGACAACATTCCAAGAAATATAATGGTTGCTTCTCAAACCAGAAGGGGAGCTCAGTCACCTTATCTAGCAAACTTGAGTGTTGACAATGGAACTGCAAACTTTCTTGGAAATTTTGCTTCCCCTCTGCATTATGGTCCTTTTTCACACAGTTATATATTGAATGCTCCTACAGGTGTCCCTTGGTCCAATGCTTTTGAACAGCATATGCCAATGTTATTGGGAGTTGGGAACCTCTCTGCAGCTGCATCTATTGGTTTCCCAAGGCAAAGCAGAAATATCGAACTTGATTTAAACTCTCCAGCAATCTCTCAAGAAAGGGACTTGGCTGTTGTAGTTAGTAGTGCTGGATTTCAGAACCAGTTCAGAACGTCACAAAGATCTGAGAATCAATCTTATCTTAATATTGGACCTCCTATTACTGTTGAAGCTAGAAACAATCTGTTAACTGAGGAGAATAGGCAACCTATACTTGGATTGAGTGAAAAAGATATTATGGTACACCTTAGGCTTGAAGAGTTCCAATCCTCCAGCGTGACCACTCCAGAAAGTGTTGAATCCTGTTGTGTATGTCAGGACAATTATGCTAATGGGGAGGACATTGGGGTCCTGGATTGCCGGCACAAGTTTCACTATGAGTGTATCAGAAAATGGCTGGGGATCAAGAACACCTGCCCCGTCTGCGTACGGACAGGACTAGCTCTGTGA 1971 0.4155 MMNHQGQNNSNESIQSVANHWESSEALRVASSSSCTGSIQSFPNSFNPNFLPYQEHLNIVRSNDRGVGVIHHNLDLNTEYVENNHETNQNVSVGLCLHSFAPDVPDNQSDTNLSDLMAIDGGSSYVVDRQGVDNCLVNMSYLSSNRSPEHASREVLTGESSRSAVQARIPILQAATVQVNASNSLDIIAPYISAANIRQQQFDAEFSHETIRPVSNMRLLNEARHGSANSSLFSFEAGSNSLNIIAPCISASNIRQQQFDAEFGHETIRPVSNMHQLNEARHGSANSSLFSFEAGIDHGITRPVYNMLRLSRARQIRHFQSNNHTDASPLASVPSSYLSMGQGRNFHSLLYGQTPQYHQRDHPHFFIQAQASVGVVPYVQPFVQFPNFHEILVPARWFNVMGPRSIAPPFSPVYIIPGGRNPDNIPRNIMVASQTRRGAQSPYLANLSVDNGTANFLGNFASPLHYGPFSHSYILNAPTGVPWSNAFEQHMPMLLGVGNLSAAASIGFPRQSRNIELDLNSPAISQERDLAVVVSSAGFQNQFRTSQRSENQSYLNIGPPITVEARNNLLTEENRQPILGLSEKDIMVHLRLEEFQSSSVTTPESVESCCVCQDNYANGEDIGVLDCRHKFHYECIRKWLGIKNTCPVCVRTGLAL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0466 656 Pfam Ring finger domain 608 649 IPR001841 -
Prci10g0466 656 SUPERFAMILY RING/U-box 608 650 - -
Prci10g0466 656 ProSiteProfiles Zinc finger RING-type profile. 609 649 IPR001841 -
Prci10g0466 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 653 IPR013083 -
Prci10g0466 656 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 143 653 IPR045191 GO:0061630
Prci10g0466 656 SMART ring_2 609 649 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0466 Prci-Chr10 3191230 3200548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0466 580 654 C3H Transcription Factor Family AT2G15530 41.026 8.30e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0466 - K22753 pcin:129284540 1313.52