Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0465 CAAGCCAAGCATCCCCCCCAAACTAATCCCTTCCCGGCCAACTCTGAAGAAGAAGAAGAAGAAGAAACGCAGGAGCACGTAGAAATACTCTCGACTCTCTGTACGTGTGACTATGATGATACCAACAATCATAATGCGTCTTCAACCTCATCTCTTTCCTCATCTTCAACTCAGGACGAAATCTCGCTATTTCTGCGTCAGATTCTCCTTCGTTCATCCTCCTCGTCGGCATCATCGTCGCTGCTTGTGACCCACACGGCTAAAAACGCCCCCACCTACGTGGCCGGACTCTGCAGTTCCCACGCCACGCCGGAGAATGCTCGCCCTTCCCACCGAGCCAACCTTTTCCAAGATGGCGTTGCAATCGTTGATTCCTCCGTTGGAGTTACCGCTCCGAACGATGTTTTTCTTTCCTCTTCGGGGACTTGTACGTCGGCCAATGCGAAGGGTAGTTTTGTTGAAAACATGCCTTCGTCATCTTTTGGAGTAAGTGACAATGAGTGGTTCGATGAGTATGATTGCAAGAGCGAGGAGGGGATCGAAGCATTGGTGGAACGGCAGCCGGTAAAGTCAGTTCCTCCGAGGAGTTCATCAAAGAGAAGCAGAGCTGCGGAAGTTCATAATTTGTCTGAAAAGAGAAGGAGAAGCAGGATCAACGAAAAAATGAAGGCATTGCAAAATCTGATTCCAAATTCGAACAAGACGGACAAGGCTTCGATGCTGGATGAAGCTATTGAATATTTGAAGCAGCTTCAGCTTCAAGTACAGATGCTGACAATGAGAAATGGTTTGAGTTTGCATCCTATGTGCTATGCTGAAGGTTTGCGGGCTCAGCAATTCTGTCAGATAAGATCTGAACTCAATGAAGAAAACGGGTCTTTGCCTTTAAGCATGGCAACTACTCTGCCTGTGACCCAAGAAAATCCCTTACAATACGAGTCCAAATCCAGTCTACCTAACAAACTCAATACACAGGACCAACCATTAGTGCCCTCTCCGTCGTACACAATCAACCCAGAAACTTCTTTTGGGCTAGAATCCCCAGTTCTGCCGCAAATAAGATCCTTTCAACAGAAAACAGCTTCTGAGATGCATAGTGATGAGATACTGCGGCACCAGCAATTAAATGCGAACCATTCAGATACCAATCCTTTAGGTGGTTCTCAAGTAACACACGCCTTTGATATGCAAACGCCGAAGGAGCAGGACAAGATCCTAAGAAATAGCGTACACAACGTTACCATTACGTCGCGGTTTAAGAGGGATCGGATTCTAGTTTCTGTCGGCCACTTTCCTGAAGTCCAGTGTGCCTCCAATGAGTATGATGCCACAACTCTATATATATGA 1347 0.4677 QAKHPPQTNPFPANSEEEEEEETQEHVEILSTLCTCDYDDTNNHNASSTSSLSSSSTQDEISLFLRQILLRSSSSSASSSLLVTHTAKNAPTYVAGLCSSHATPENARPSHRANLFQDGVAIVDSSVGVTAPNDVFLSSSGTCTSANAKGSFVENMPSSSFGVSDNEWFDEYDCKSEEGIEALVERQPVKSVPPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMRNGLSLHPMCYAEGLRAQQFCQIRSELNEENGSLPLSMATTLPVTQENPLQYESKSSLPNKLNTQDQPLVPSPSYTINPETSFGLESPVLPQIRSFQQKTASEMHSDEILRHQQLNANHSDTNPLGGSQVTHAFDMQTPKEQDKILRNSVHNVTITSRFKRDRILVSVGHFPEVQCASNEYDATTLYI 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0465 448 CDD bHLH_AtPIF_like 202 264 IPR047265 -
Prci10g0465 448 MobiDBLite consensus disorder prediction 200 214 - -
Prci10g0465 448 MobiDBLite consensus disorder prediction 187 214 - -
Prci10g0465 448 SMART finulus 208 257 IPR011598 GO:0046983
Prci10g0465 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 262 IPR036638 GO:0046983
Prci10g0465 448 Gene3D - 197 261 IPR036638 GO:0046983
Prci10g0465 448 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 52 379 IPR031066 -
Prci10g0465 448 Pfam Helix-loop-helix DNA-binding domain 206 252 IPR011598 GO:0046983
Prci10g0465 448 MobiDBLite consensus disorder prediction 1 25 - -
Prci10g0465 448 FunFam Basic helix-loop-helix transcription factor 197 260 - -
Prci10g0465 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Prci10g0465 448 Coils Coil 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0465 Prci-Chr10 3185021 3188028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0465 15 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 39.762 1.39e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci10g0465 HLH 5.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0465 - - pcin:129321987 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0465 10 3185021 3188028 Prci10g0465 10 3185021 3188028 ECH