Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0464 ATGGCTGATGAACAGCCTCCAACGACTTCCAGGCGAAGGGGAAGAGGAGCCGAGGCATCGGCGCGTTCCGAAGCATTGGAGCGCCTAAAAGCTCGACTCCGTGGCGGTCGTCGTTCAGACGCCGAAGGATATCAAATTAAGTTGGATAACCCTATTTACGATACTGTGGCCGAGGACGAGTACAATGCTTTGGTCGCCAAGCGCCGCGAAGAAGCCCGAGGTTTCATTGTCGACGATGACGGTCTTGGGTACGGGGACGAGGGGGAGGAGGAGGATTGGTCAAAAGCTGGGTTCAATCTGTCCTCCGATGAATCCGATGGCGATACAGAAAAGCCCAAAAGGAAGAGACAAGAAAAGAAAGATCCGCAACCTAAAAAGCCATCGTCTTCACTCTCGGCTGCGGCAGCGATGATAGGGGCGCAGAGGTTGTCATCGATGTTCACTTCGTCGGTTTTTAAGAAAAGCAGGGATGATAAGGCTAAGGGGTTTTCTTCTGATAGCATTGTTGATGATGTTATTGCGGAGTTTGCACCGGATGAGACTGACAGACTAAGACGTAGACGCGGGCCAGCAAATCCTTCTTCAGGTGCGAACAATGCTCAGCCGATTAATAATGTTAAGATCGAGGAATCATCGATTGGATGTCCTGATCCAACAGGAGGTCCTTTGTCGTCGGATTCTGTCGCAAATGGCAATTATGAATCCGCCAGAGTAGTGAAAAACGATGGTTATGGCTTGGGTTCCGAGCAGAACTACGGAAGAGTCAAAGTAGAGGAAACTGCTAAAGAATCAGAAGATGGAAGAACTGTTAATTCCGACGATGGTCTGGCATCAATCATGCAAACCCCTAGCGGTCCAACAAACGGAGATGTGACTGAAGAGAAAATGTTAAAGGATGTTGAGGTAGAAGCTAAACAAACAATTGAGAAGGAGGTATTTCCTCTGAATGCGAAAGTGAAGGAAGAGGACCCTGCACTGAGTGCGACTGCTGGTTGGCAGGCAGCAAGGAGCGGGGGGGATGTCAATGCTGCTGATTCAAAAGTGGCCGACGAAGCTTTAAATAGTGAAGAAAACTCACAGTTCAATCTGGAGGCTGATGGGTCTCTGCCTTTCTACATACTTGATGCCCATGAGGAATTCTATGGAGCTAACACGGGCACCCTGTATTTGTTTGGGAAGGTCAAATCAGGTAATTCGTATCAGAGTTGCTGTGTTGTTGTAAAGAACATGCAGAGGTGTGTCTATGCAATTCCAAGCCATCCTTTAAATCACACTGATGAGATGATGGAACTTGAGAAGGATGTTGAAGAATCTGGAATTTCTCGTACAGACTTTCACAAAAAGCTGCAAGATATGGTGTCTGGTTTAAAGAATGAGATAGCAAAACAACTGTTAGATCTGAACGCTTCAACCTTTAGCATGAAACCTGTTAAGAGGAAGTATGCATTTGAATGTTCTGAAATACCTGCCGGTGAAAATTATGTGCTGAAAATCAACTATCCATTCAAGGATCCACCCCTTCCAGTAGATCTGAAAGGAGAGAGTTTCTGTGCTCTTCTAGGAACTCATTGCAGTGCATTGGAGCTTTTTCTAATTAAAAGAAAGATAAAGGGGCCTTCATGGCTACTGCTGTCAAACTTCACTTCCCAACTTGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCTCCTAAATACATAAGGATTTCAACTTCCTCCAAATCTAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCTATAAATTTGAAAACCATCATAAATGAAAAACAAAACTTAAACGAGATTGTCTCTGCATCCATAGTATGCTGCCAAAGGGTGAAGATTGACACTCCCATGTTGGCTCCAGAATGGAAGAGACCTGGACTACTGACCCATTTTACTGTTGTCCGTAAGCTTGATGGAGGCATATTTCCACTGGGATTCAATACGGAAGTTACAGACCGAAACACAAAAGCTGGCTCAAATGTTCTCTGCGTTGAGAGCAGTGAAAGGGCTTTGCTTAACCGTCTGATGATAGAATTCCACAAGTTGGATAGTGATGTTCTTGTTGGACATAACATCTCTGGATTTGACCTGGATGTTCTTCTTCACAGATGTCAGGCTTCTAAAGTGCCAAGCAGTATGTGGTCCAAAATAGGCCGCCTTAAACGCTCTGTGATGCCTAAACTTACCAGATTAAGCTCTGTTTTTGGTTCTGGAGCTACTCCTGGCATCTTGTCTTGCATTGCTGGTCGTCTTCTTTGTGATACATATTTGTGTGCGCGTGAACTATTAAAGGAGGTTAGTTACTCTTTATCTCAGCTATCAAAAACTCAGCTGAATAAAGTTCGAAAGGAAGTTGCTCCTCATGATGTTCCGAAAATGTTCCAATTTGCAGAATCCCTTATGGAACTTATTGAGTATGGCGAGACAGATGCATGGTTGTCTATGGAACTCATGTTTCATTTGAGTGTTCTACCCCTCACGCGTCAGCTGACTAATATTAGTGGTAATTTGTGGGGAAAAACTCTTCAGGGTGCAAGGGCACAGAGAGTGGAGTATCTTCTGTTGCATGCTTTCCATGCAAAGAAATATATTGTGCCAGACAAGATTCCTTCCCATGCCAACGAAAGAAAATTGACAAAACGCAGAGGAACTCATGGTGTTGAGGATGTTAGCTTTGAGGAAGTGGATGTTGACAATACACGCTATGACAATGATGCTCCTGACAGTGATCATGGTAAAAGCAAGAAGACTCCTTCCTATGCTGGAGGACTGGTTTTGGAGCCTAAAAGGGGTTTATATGACAAATATATATTGCTCTTGGATTTCAATAGTCTTTATCCTTCTATAATTCAGGAATACAATATCTGCTTCACGACTGTTGAAAGATCTACAAATGGATCCTTTCCTCGTCTGCCATCTAGTAAAACAACTGGAGTTTTGCCAGAGCTGCTGAAAATTTTGGTTCAAAGGAGGAGAATGGTAAAATCGTGGATGAAAACTGCTTCTGGTCTTAAAGTTCAGCAACTAGACATTCAGCAACAAGCACTTAAGCTTACTGCAAACAGCATGTATGGATGCCTTGGATTTGCTAATTCAAGATTTTATGCAAAACCACTGGCTGAGCTTATAACCCTGCAAGGAAGGGAGATATTACAAAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTGATATATGGCGACACTGATTCAATAATGATTTACAGTGGACTAGATGATATTGCAAAAGCAAAAGCAATGGCTGGAAAAGTGATTCAAGAGGTCAACAAGAAGTATAGGTGCTTGGAAATTGATCTGGATGGTTTGTACAAGAGAATGCTGCTTCTTAAGAAAAAGAAGTATGCAGCTGTCAAGGTGCAGTTCAAAGATGGCACACCATACGAGGTTATTGAACGTAAAGGTCTGGACATTGTTCGTCGTGACTGGAGCCTATTATCTAAAGAAATAGGAGATTTTTGCCTTGGTCAAATTTTGTCAGGAGGGTCATGTGAGGATGTTGTCGAGTCAATTCACAGCTCTCTTCGTAAGGTGCAAGAAGAGATGAGGAGTGGGCAAGTGCCGTTAGAGAAATATATCATCACTAAGACATTGACTAAACCTCCTGAAGCCTATCCAGATGCCAAAAATCAACCGCATGTTCTTGTGGCACAAAGATTGAAGCAAAAGGGCTACTCCAGCGGTTGCTCTGTTGGTGATGCAATCCCCTACATTATTTGCTATGAGCAGGGCAGTAATTCAACCAGTGGAACAAGTATTGCTCAGCGTGCTAGACATCCCGAGGAACTAAAACAAGAGCAAGGGAAATGGATGATTGACATTGATTATTACTTGTCACAACAGCTTCATCCTGTTGTATCACGTCTCTGTGCATCAATTCAGGGGACGAGTCCAGAAAGACTGGCTGATTGTTTAGGGCTCGATGCATCAAAATTTCAACACAAATCCAGTGAAGCCTTCAATGGTGATCCTTCAAATTCACTCTTGTTTGCTGCTGAAGACAAAGAGAGGTATAAAGGATGTGAGCCATTGGTTTTGTCATGTCCTAGCTGCTCTGGTACTTTTGACTGTCCTTCCATCTTTAAATCTATTTGTGAAAGTGAAAAGCCAACAAGCTCAGGCATGGAGGAGTCCAGCTACAATTTCTGGCGTAAGCTGCGCTGTCCTAAATGCCCAGAAGAAGATGGTGTTGCCAGAATTTCTCCTGCCATGATTGCCAATCAGGTCAAAAGGCAGGCAGACAAGTTTATTTCAATGTACTACAGAGGCTTGTTAATGTGTGACGATGAAACTTGTAAGTATGCAACACGAAGTATCAACCTTCGGCTGGTTGGTGATTCTGAAAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGACGTCTTCTAAGACAGTACACGGAGGCGGACTTGTACAAACAGCTTTCATACTTTTGCCATGTGTTGGATACTGTTTCCTGTATAGAAAAGATGGAGGATAAATCTAGGATACCGCTTGAGAAAGAGTTGTCGAAAATTAGGCCAATGATTGATCTGGCAGCATCGACGATACAGAAGATTCGGGATAGGTGTGCCTTTGGGTGGGTGCAGATGCAGGACTTGGTCATTGCTGTGTGA 4662 0.4352 MADEQPPTTSRRRGRGAEASARSEALERLKARLRGGRRSDAEGYQIKLDNPIYDTVAEDEYNALVAKRREEARGFIVDDDGLGYGDEGEEEDWSKAGFNLSSDESDGDTEKPKRKRQEKKDPQPKKPSSSLSAAAAMIGAQRLSSMFTSSVFKKSRDDKAKGFSSDSIVDDVIAEFAPDETDRLRRRRGPANPSSGANNAQPINNVKIEESSIGCPDPTGGPLSSDSVANGNYESARVVKNDGYGLGSEQNYGRVKVEETAKESEDGRTVNSDDGLASIMQTPSGPTNGDVTEEKMLKDVEVEAKQTIEKEVFPLNAKVKEEDPALSATAGWQAARSGGDVNAADSKVADEALNSEENSQFNLEADGSLPFYILDAHEEFYGANTGTLYLFGKVKSGNSYQSCCVVVKNMQRCVYAIPSHPLNHTDEMMELEKDVEESGISRTDFHKKLQDMVSGLKNEIAKQLLDLNASTFSMKPVKRKYAFECSEIPAGENYVLKINYPFKDPPLPVDLKGESFCALLGTHCSALELFLIKRKIKGPSWLLLSNFTSQLASRRVSWCKFEVIVDSPKYIRISTSSKSSFEIPPVVVTAINLKTIINEKQNLNEIVSASIVCCQRVKIDTPMLAPEWKRPGLLTHFTVVRKLDGGIFPLGFNTEVTDRNTKAGSNVLCVESSERALLNRLMIEFHKLDSDVLVGHNISGFDLDVLLHRCQASKVPSSMWSKIGRLKRSVMPKLTRLSSVFGSGATPGILSCIAGRLLCDTYLCARELLKEVSYSLSQLSKTQLNKVRKEVAPHDVPKMFQFAESLMELIEYGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKIPSHANERKLTKRRGTHGVEDVSFEEVDVDNTRYDNDAPDSDHGKSKKTPSYAGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSTNGSFPRLPSSKTTGVLPELLKILVQRRRMVKSWMKTASGLKVQQLDIQQQALKLTANSMYGCLGFANSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDGTPYEVIERKGLDIVRRDWSLLSKEIGDFCLGQILSGGSCEDVVESIHSSLRKVQEEMRSGQVPLEKYIITKTLTKPPEAYPDAKNQPHVLVAQRLKQKGYSSGCSVGDAIPYIICYEQGSNSTSGTSIAQRARHPEELKQEQGKWMIDIDYYLSQQLHPVVSRLCASIQGTSPERLADCLGLDASKFQHKSSEAFNGDPSNSLLFAAEDKERYKGCEPLVLSCPSCSGTFDCPSIFKSICESEKPTSSGMEESSYNFWRKLRCPKCPEEDGVARISPAMIANQVKRQADKFISMYYRGLLMCDDETCKYATRSINLRLVGDSERGTVCPNYPRCNGRLLRQYTEADLYKQLSYFCHVLDTVSCIEKMEDKSRIPLEKELSKIRPMIDLAASTIQKIRDRCAFGWVQMQDLVIAV 1553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0464 1553 Gene3D - 584 895 IPR036397 GO:0003676
Prci10g0464 1553 Pfam DNA polymerase family B, exonuclease domain 400 778 IPR006133 -
Prci10g0464 1553 FunFam DNA polymerase 1150 1336 - -
Prci10g0464 1553 CDD DNA_polB_alpha_exo 584 835 - -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 1 24 - -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 76 137 - -
Prci10g0464 1553 Gene3D Palm domain of DNA polymerase 912 1137 IPR023211 -
Prci10g0464 1553 Gene3D - 1150 1335 IPR042087 -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 274 289 - -
Prci10g0464 1553 SMART polmehr3 584 1086 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci10g0464 1553 FunFam DNA polymerase 1345 1539 - -
Prci10g0464 1553 Pfam DNA polymerase alpha subunit p180 N terminal 26 93 IPR024647 -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 904 921 - -
Prci10g0464 1553 SUPERFAMILY DNA/RNA polymerases 868 1321 IPR043502 -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 904 926 - -
Prci10g0464 1553 Coils Coil 1100 1120 - -
Prci10g0464 1553 ProSitePatterns DNA polymerase family B signature. 1074 1082 IPR017964 GO:0000166|GO:0003676
Prci10g0464 1553 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1551 - -
Prci10g0464 1553 FunFam DNA polymerase 984 1033 - -
Prci10g0464 1553 FunFam DNA polymerase 411 537 - -
Prci10g0464 1553 NCBIfam DNA polymerase (pol2) 52 1304 - -
Prci10g0464 1553 FunFam DNA polymerase 584 898 - -
Prci10g0464 1553 Gene3D Helix hairpin bin 982 1033 - -
Prci10g0464 1553 Pfam DNA Polymerase alpha zinc finger 1346 1549 IPR015088 GO:0003887|GO:0006260
Prci10g0464 1553 SUPERFAMILY Ribonuclease H-like 366 872 IPR012337 -
Prci10g0464 1553 Gene3D DNA Polymerase alpha, zinc finger 1346 1538 IPR038256 -
Prci10g0464 1553 Gene3D - 411 537 - -
Prci10g0464 1553 Gene3D - 371 570 - -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 192 208 - -
Prci10g0464 1553 MobiDBLite consensus disorder prediction 179 229 - -
Prci10g0464 1553 PRINTS DNA-directed DNA-polymerase family B signature 1072 1080 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci10g0464 1553 PRINTS DNA-directed DNA-polymerase family B signature 1019 1031 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci10g0464 1553 PRINTS DNA-directed DNA-polymerase family B signature 943 956 IPR006172 GO:0000166|GO:0003676|GO:0003887
Prci10g0464 1553 MobiDBLite consensus disorder prediction 104 125 - -
Prci10g0464 1553 CDD POLBc_alpha 919 1322 IPR045846 GO:0003887|GO:1902975
Prci10g0464 1553 MobiDBLite consensus disorder prediction 258 291 - -
Prci10g0464 1553 Pfam DNA polymerase family B 843 1306 IPR006134 GO:0000166|GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0464 Prci-Chr10 3168638 3181420 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0464 1 1551 Core DNA Replication Machinery Family AT5G67100 61.108 0.0 1867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0464 K02320 - zju:107424534 2238.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0464 10 3168638 3181420 Prci10g0464 10 3168638 3181420 ECH