Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0441 ATGGTACGGAATCAATATAAGCTCTTGGGCATTCAGAAAAAACATTCGGATTCTATACCGAGTCAAGGTGCATCCGATCAGGCACAGCAGCTTGCAAGCTCCACTAAGGTGGCATCAGACAAGACATTATCAGCAGGAGAGGCCAGGTCGTCTGCTGTGTTTCGAGCAGAGATGATCCAATCAAAGTTAGATCCGAGATTCCCTAGCTTTGTGAAGTCATTGGTCAGATCACACGTTGCTGGTTGTTTTTGGATGGGGCTCCCTGCGTTCTTCTGTAAGAGACACTTACCAGATAATGACACTACAGTTACTTTGGAAGATGAATCTGGTAAAGGATACCAATTGAAATACATTGCTTGCAAGACAGGTTTAAGCGCTGGTTGGAGGCAGTTTTCTGCTGCCCACAAATTGCAGGAGGGAGATGTTTTGGTCTTCCAATTAGTTGAACCGTCTAAATTTAAGGTTTATATAGTAAGAGCAAATGGCTTGAGTGAACTGGATGGGGCGGTTTCCCTTCCCAATCTGGACGATCATACCAAGCAAAAAGCAAGAGATAATGCAAATAAGGATGCTCTTCCGAGTAATAGCCCTAAGAGGAAACAACAAAAATCTGATTTACCACCTCCGGTTGTCCAGAAGAAAAAGAAGACTAATGCGTCGAGGATTTCCCCCAAGGTTAGGCAGCGTGCAGAACACTGTGAATATGAAAGTGATGAAGCTGGTTCAGAAGTACTGGAGAGCTTTGGAAGGGAGGTTAAATTCAAGGATGTAAGGGGTTTTGAAAATTTCAGTATCATAGTTGATGGAATTCCAATAGATTCTGAGCTCCCCCATGAGGTTAGAAATAAGTACTACAAACTCTGCCATAGCCAGCAGGCCTTTCTACACGATAATCTCATCAAGGGCATCAACTATAACCTTCTTGTCGGCATCGTATCTGAAGTTGTCAACATTGCTGATGCCCTGAGATCTAGCTCGCTACATATCTCACCCACTGAATTTGCTAAATGGGATAAAGAGTTGCTAGCCTTTGAGTTTTTGGGGATGAATGTGGAATTTTTAAGACACCGGTTATGCAGGCTTGTAAACTTGGCATATGAAACACAAGATGCCTCCGAGACTTCAAGGCATTCGGAGTCCACAGCTGAATTCAGTCGAGCAGATAACGAGATAATGAACATTGAAACAAAGCTGGAAGAATTGAAAGAAGCTTGTGATGGTTTTGGTTCTTATATTGAGAGTTTGAGGTACAAAGGTGGGCGCTTCCATCACTAG 1275 0.4322 MVRNQYKLLGIQKKHSDSIPSQGASDQAQQLASSTKVASDKTLSAGEARSSAVFRAEMIQSKLDPRFPSFVKSLVRSHVAGCFWMGLPAFFCKRHLPDNDTTVTLEDESGKGYQLKYIACKTGLSAGWRQFSAAHKLQEGDVLVFQLVEPSKFKVYIVRANGLSELDGAVSLPNLDDHTKQKARDNANKDALPSNSPKRKQQKSDLPPPVVQKKKKTNASRISPKVRQRAEHCEYESDEAGSEVLESFGREVKFKDVRGFENFSIIVDGIPIDSELPHEVRNKYYKLCHSQQAFLHDNLIKGINYNLLVGIVSEVVNIADALRSSSLHISPTEFAKWDKELLAFEFLGMNVEFLRHRLCRLVNLAYETQDASETSRHSESTAEFSRADNEIMNIETKLEELKEACDGFGSYIESLRYKGGRFHH 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0441 424 SUPERFAMILY DNA-binding pseudobarrel domain 63 162 IPR015300 -
Prci10g0441 424 MobiDBLite consensus disorder prediction 188 202 - -
Prci10g0441 424 Gene3D - 46 162 IPR015300 -
Prci10g0441 424 SMART B3_2 70 161 IPR003340 GO:0003677
Prci10g0441 424 Pfam B3 DNA binding domain 70 160 IPR003340 GO:0003677
Prci10g0441 424 MobiDBLite consensus disorder prediction 170 234 - -
Prci10g0441 424 ProSiteProfiles B3 DNA-binding domain profile. 70 161 IPR003340 GO:0003677
Prci10g0441 424 CDD B3_DNA 68 159 IPR003340 GO:0003677
Prci10g0441 424 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 36 162 IPR044837 -
Prci10g0441 424 Coils Coil 384 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0441 Prci-Chr10 2974631 2978565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0441 40 189 B3 DNA Binding Superfamily AT3G19184 43.709 1.16e-36 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci10g0441 B3 6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0441 - - vra:106768002 481.87