Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0423 ATGTCATCATCGAATTCTCCGTGCGCTGCGTGCAAGTGTCTGAGGCGGAAATGCACGCAAGAATGCGTGTTCGCACCGTACTTCCCGCCGGACAACCCCCAGAGGTTCGCTTACGTCCACAGGGTATTCGGGGCAAGCAATGTCGCTAAGCTTCTCAATGAGCTCAACGCTGCGCAGAGAGACGACGCCGTCAAGTCTCTGGCTTACGAAGCCGAGGCCCGTCTCCGGGACCCAGTCTATGGCTGTGTGGGTCTCATCTCCATCCTTCAGCACAGGCTCAGGCAGATCCAAGTCGAACTCAATAATGCCAAGAAGGAGCTCGCCACGTATATTGGCCCTCAGGCTCTTCAGGCCATGCCTCCCACCATTCTGGCACCTTCTGGTATGATCCCACCGCAACACCCAAACAACCCATATTCTTCCACCACCGCCTATCCCTATAACAACATGCCACCGCCTGCGCCTATGACCAATATTCAGGCCGGTGGCTCTTCTCATAGCGGCCAACTGGTGATTCGCGACCCTTCCCAACAGCATCAGATCTTGGACGCTCAGCAATTGGCTGCCGCCGTGGGGGCGAGAGAACAGCAAGATATGTTCCGAGGTTATGAGCAGCAGCAACAGCAGCAAGAGTTTCTGAGGTTCAACGGTGGATACGATGTGGGTTCAGTTTCTGGGAGTGGATTCAACAATCACATATCTTCAACTGCTAGTCCCACCGAGATGTCTCCTTCCTTGGCTCTTGGCTCCTTCGACAGCCCTTACGGCGGCCAGATGCAACCGCCGCAAGCCGAACACCACCACCATCAGCTTCAAGCCCAGCTGATGCTTTCCCCTCAGCAGCCGCAACCACAGCAACAAAGCCAGCAGTCACAGCAACCCCATCATCAGCAACAGTCAGAAAGCGAGGAGGGTAGGAGTGGCATCTGCCTTTCTTGTTGA 942 0.5552 MSSSNSPCAACKCLRRKCTQECVFAPYFPPDNPQRFAYVHRVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISILQHRLRQIQVELNNAKKELATYIGPQALQAMPPTILAPSGMIPPQHPNNPYSSTTAYPYNNMPPPAPMTNIQAGGSSHSGQLVIRDPSQQHQILDAQQLAAAVGAREQQDMFRGYEQQQQQQEFLRFNGGYDVGSVSGSGFNNHISSTASPTEMSPSLALGSFDSPYGGQMQPPQAEHHHHQLQAQLMLSPQQPQPQQQSQQSQQPHHQQQSESEEGRSGICLSC 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0423 313 Coils Coil 86 106 - -
Prci10g0423 313 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 299 - -
Prci10g0423 313 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Prci10g0423 313 MobiDBLite consensus disorder prediction 273 307 - -
Prci10g0423 313 MobiDBLite consensus disorder prediction 235 313 - -
Prci10g0423 313 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0423 Prci-Chr10 2806536 2808637 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0423 1 309 AS2 family AT5G66870 49.847 3.91e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Prci10g0423 LOB 7.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci5g0179 5 2555954 2559484 Prci10g0423 10 2806536 2808637 CCT
Prci10g0423 10 2806536 2808637 Prci10g0423 10 2806536 2808637 ECH