Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0328 ATGGACGATCACATGGTGCTTGTCTCTCAGCTGTACCCTGGTGCTTACTCGCAAATAATTCCTCAACAAGGGGAGACAAAGCCGAGACGACGTCGTAAGAAGAACAAGGGAGGAGAAAACGGAGACGGGGGAGTTAAGAAGAGGAAGCTGAGTGCAGAGCAGGTGAATCTTCTAGAGCTAAACTTTGGTAACGAACATAAATTAGAGTCTGAACGGAAGGACCGGCTGGCGTCGGAGCTGGGCTTGGATCCGCGTCAAGTGGCTGTTTGGTTCCAAAACCGAAGGGCGCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCCAGCCTCAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTACTGAAGCTAAAGGAGCAGCTTTCAGAAGCAGAGAGAGATATTCAACGGCTTCAGGAGCGAGTCGAAAGGGTATCGAGCAGCAACAGCCCCAGCTCGTCACAGTCGATGGAAGCTGTGAATCCACCATTTCTGGGAGATCTTAGCGTTGAGGCTTATGACGATGGCGTGTTTTACATGCCACAGACCCATTACATCAGTGGCATGGATGAGTGGATGTTCATGTGA 609 0.5057 MDDHMVLVSQLYPGAYSQIIPQQGETKPRRRRKKNKGGENGDGGVKKRKLSAEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKVHESTILEKCRLETEVLKLKEQLSEAERDIQRLQERVERVSSSNSPSSSQSMEAVNPPFLGDLSVEAYDDGVFYMPQTHYISGMDEWMFM 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0328 202 ProSitePatterns 'Homeobox' domain signature. 76 99 IPR017970 GO:0000981|GO:0006355
Prci10g0328 202 Gene3D - 38 111 - -
Prci10g0328 202 MobiDBLite consensus disorder prediction 149 167 - -
Prci10g0328 202 Coils Coil 128 155 - -
Prci10g0328 202 SMART HOX_1 44 105 IPR001356 GO:0003677
Prci10g0328 202 MobiDBLite consensus disorder prediction 18 49 - -
Prci10g0328 202 CDD homeodomain 46 102 IPR001356 GO:0003677
Prci10g0328 202 MobiDBLite consensus disorder prediction 148 167 - -
Prci10g0328 202 SUPERFAMILY Homeodomain-like 45 109 IPR009057 -
Prci10g0328 202 ProSiteProfiles 'Homeobox' domain profile. 41 101 IPR001356 GO:0003677
Prci10g0328 202 Pfam Homeodomain 47 100 IPR001356 GO:0003677
Prci10g0328 202 MobiDBLite consensus disorder prediction 35 49 - -
Prci10g0328 202 PRINTS Lambda-repressor HTH signature 81 97 IPR000047 GO:0003677
Prci10g0328 202 PRINTS Lambda-repressor HTH signature 72 81 IPR000047 GO:0003677
Prci10g0328 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 162 IPR045224 GO:0003700
Prci10g0328 202 Coils Coil 93 120 - -
Prci10g0328 202 FunFam homeobox-leucine zipper protein ATHB-40 38 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0328 Prci-Chr10 2229553 2231455 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0328 2 200 Homeobox Transcription Factor Family AT4G36740 59.135 1.60e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Prci10g0328 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0328 K09338 - zju:107424830 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0328 10 2229553 2231455 Prci5g0124 5 1925436 1927421 CCT
Prci10g0328 10 2229553 2231455 Prci10g0328 10 2229553 2231455 ECH