Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0327 ATGGACGATCACATGGTGCTTGTCTCTCAGCTGTACCCTGGTGCTTACTCGCAAATAATTCCTCAACAAGGTTTCCATCTTGGGGAGACAAAGCCGAGACGACGTCGTAAGAAGAACAAGGGAGGAGAAAACGGAGACGGGGGAGTTAAGAAGAGGAAGCTGAGTGCAGAGCAGGTGAATCTTCTAGAGCTAAACTTTGGTAACGAACATAAATTAGAGTCTGAACGGAAGGACCGGCTGGCGTCGGAGCTGGGCTTGGATCCGCGTCAAGTGGCTGTTTGGTTCCAAAACCGAAGGGCGCGTTGGAAGAACAAGAAGTTGGAGGAAGAGTACTCCAGCCTCAAGAAAGTCCACGAGTCCACCATTCTCGAGAAATGCCGCCTTGAAACCGAGGTACTGAAGCTAAAGGAGCAGCTTTCAGAAGCAGAGAGAGATATTCAACGGCTTCAGGAGCGAGTCGAAAGGGTATCGAGCAGCAACAGCCCCAGCTCGTCACAGTCGATGGAAGCTGTGAATCCACCATTTCTGGGAGATCTTAGCGTTGAGGCTTATGACGATGGCGTGTTTTACATGCCACAGACCCATTACATCAGTGGCATGGATGAGTGGATGTTCATGTGA 621 0.504 MDDHMVLVSQLYPGAYSQIIPQQGFHLGETKPRRRRKKNKGGENGDGGVKKRKLSAEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKVHESTILEKCRLETEVLKLKEQLSEAERDIQRLQERVERVSSSNSPSSSQSMEAVNPPFLGDLSVEAYDDGVFYMPQTHYISGMDEWMFM 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0327 206 Pfam Homeodomain 51 104 IPR001356 GO:0003677
Prci10g0327 206 SUPERFAMILY Homeodomain-like 49 113 IPR009057 -
Prci10g0327 206 Gene3D - 43 115 - -
Prci10g0327 206 MobiDBLite consensus disorder prediction 153 171 - -
Prci10g0327 206 Coils Coil 132 159 - -
Prci10g0327 206 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Prci10g0327 206 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Prci10g0327 206 MobiDBLite consensus disorder prediction 23 52 - -
Prci10g0327 206 CDD homeodomain 50 106 IPR001356 GO:0003677
Prci10g0327 206 MobiDBLite consensus disorder prediction 152 171 - -
Prci10g0327 206 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 40 166 IPR045224 GO:0003700
Prci10g0327 206 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Prci10g0327 206 SMART HOX_1 48 109 IPR001356 GO:0003677
Prci10g0327 206 FunFam homeobox-leucine zipper protein ATHB-40 42 113 - -
Prci10g0327 206 Coils Coil 97 124 - -
Prci10g0327 206 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0327 Prci-Chr10 2229553 2231457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0327 1 206 Homeobox Transcription Factor Family AT2G18550 57.207 1.30e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Prci10g0327 Homeodomain 2.7e-16 CL0123