Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0302 ATGGAGAACGGAGTGAAGAGCAATGGAAATGCAAAGTCACCGACTTTGGTAGAAAAGCATGAGTTGGAGACAGAGGAAGTAGATGTTAAGAATGAGGAGCCTTCATTTTTATCGAGGTCAATGGAAGAAGAGGAAAAACAGCTTTTGGAAACTCGAATTAAGGAAGAGGAATCCAAACATGAGCCACAGGAAACACCAAAGCTTAATGAAAGTCAGTTTAGCAAGTTGGATGAGCTTTTAACACAGACCCAACTTTACTCGGAATTTCTACTGGAGAAAATGGATGACATCACACTTAATGGGGGTGAACAAGAGGATGAGACGGTTGAGAAAAAGACGGGCCGTGGCTCAAAAAGAAAAGCAAAATCAGAATATAATAATAAGAAAGCCAAAAGAGCAGTAGCTGCCATGCTTACAAGATCTAAAGAAAGTGAGGGAGCTGAAGATATGAGCCTGACAGAAGAGGAAAGAATTGATAAGGAGCAGAAAGAGCTTATACCTCTCTTGACAGGTGGAAAGTTGAAGCAATATCAAATGAAGGGTGTCAAATGGTTGATCTCATTGTGGCAAAACGGGCTTAATGGGATTTTGGCTGATCAAATGGGTCTTGGGAAGACAATTCAAACTATTGGTTTTCTTGCACATCTGAAAGGGAAAGGTTTGGATGGCCCATATTTGATAATTGCTCCTCTATCAACCCTTTCTAATTGGATGAATGAAATTTCCCGGTTTGCTCCAATACTTACTACTATTATTTACCATGGTGACAAGAAGGAAAGAGATGAGATCCGAAGGAAGCATATGCCCAGAACAATTGGCCCAAAATTTCCCATAGTCATAACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAGATATCTCAAGTTCTACCATTGGAAATATGTTGTAATTGATGAGGGACACAGGCTCAAAAATTCAAAGTGCAAATTAGTCCAGATGTTGAAATTCTTACCAGTTGAAAATAAACTTCTTTTAACTGGGACACCTCTTCAGAATAACTTGGCTGAGCTATGGTCATTGTTGAACTTCATTTTACCTGACATTTTCTCATCCCTTGAAGAATTTGAGTCATGGTTCAATCTGTCAGGAAAGTGCAGTACTGGAGCAACAAAAGAAGAATTAGAAGAAGGAAGAAGAGCTCAGGTGGTAGCTAAGCTCCATGCCATTCTGCGCCCCTTTCTTCTCCGTAGGATGAAGAGTGATGTTGAGCAGATGTTGCCGCGAAAAAAAGAGATAATAATATATGCCAGTATGACTGAACATCAGAAGAATTTTCAGGAACATTTAATTAACAAGACATTGGAGAAATATCTCCGTGAAAAATCTGCAGTGGGACGTGCTTCAAAAAATATTCGTAATGTGGTCATTCAGCTTAGAAAGAACTGTAATCATCCTGACCTCTTAGAGTCAGCCTTTGATGATTCGTTTCTCTATCCACCTGTCAATGAGATAGTTGAACAATGTGGGAAATTCCGTTTACTAGACCGTCTGTTGGCTCATTTATTTGAACGGAAGCACAAAGTTCTGATCTTCAGCCAGTGGACTAAAATTTTGGATATAATGGATTACTATTTTAGTGAAAAGGGCTTTGAAGTTTGCAGAATTGATGGCAGTGTAAAACTAGATGAAAGGAAAAGACAGATTGAGGAGTTCAATGATGTGAATAGCAATTACAGGATCTTTCTTCTCAGTACTAGGGCTGGTGGATTGGGAATTAATCTTACTGCAGCTGACACTTGTATCATTTATGACAGTGATTGGAATCCTCAGATTGATTTACAGGCCATGGATAGATGTCACAGAATTGGTCAAACTAAGCCTGTTCATGTCTACAGGCTTGCAACAGCTCACTCTGTGGAGGGTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGAAAGGGGCAATTTCATCAAGAACGGATGAAACCCAACTCTATGGATGTCAAAGAGGATGAGGAATTGTTGGAATTGCTTCAAGAGGAAGAATCTGCTGAAGACAAAGCGATCCAAACAGATATTAGTGATGAAGACTTAGAGAAGCTTTTGGATCGCAGTGATCTTATCTCTGGTAACTTAAATTGTCCGAGCAAGATTCCTCTTAAAGGGCCTGGATGGGAGGTGGTGATTCCTACCGGGAGCATGCTTTCTACTCTTAACAGCTAA 2205 0.4 MENGVKSNGNAKSPTLVEKHELETEEVDVKNEEPSFLSRSMEEEEKQLLETRIKEEESKHEPQETPKLNESQFSKLDELLTQTQLYSEFLLEKMDDITLNGGEQEDETVEKKTGRGSKRKAKSEYNNKKAKRAVAAMLTRSKESEGAEDMSLTEEERIDKEQKELIPLLTGGKLKQYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLIIAPLSTLSNWMNEISRFAPILTTIIYHGDKKERDEIRRKHMPRTIGPKFPIVITSYEVALNDAKRYLKFYHWKYVVIDEGHRLKNSKCKLVQMLKFLPVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLEEFESWFNLSGKCSTGATKEELEEGRRAQVVAKLHAILRPFLLRRMKSDVEQMLPRKKEIIIYASMTEHQKNFQEHLINKTLEKYLREKSAVGRASKNIRNVVIQLRKNCNHPDLLESAFDDSFLYPPVNEIVEQCGKFRLLDRLLAHLFERKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGSVKLDERKRQIEEFNDVNSNYRIFLLSTRAGGLGINLTAADTCIIYDSDWNPQIDLQAMDRCHRIGQTKPVHVYRLATAHSVEGRMLKRAFSKLKLEHVVIGKGQFHQERMKPNSMDVKEDEELLELLQEEESAEDKAIQTDISDEDLEKLLDRSDLISGNLNCPSKIPLKGPGWEVVIPTGSMLSTLNS 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0302 734 Gene3D - 175 405 IPR038718 -
Prci10g0302 734 MobiDBLite consensus disorder prediction 102 126 - -
Prci10g0302 734 FunFam ATP-dependent DNA helicase DDM1 168 413 - -
Prci10g0302 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 702 IPR027417 -
Prci10g0302 734 MobiDBLite consensus disorder prediction 16 66 - -
Prci10g0302 734 Coils Coil 39 61 - -
Prci10g0302 734 Gene3D - 410 708 IPR027417 -
Prci10g0302 734 SMART helicmild6 526 610 IPR001650 -
Prci10g0302 734 Pfam Helicase conserved C-terminal domain 499 610 IPR001650 -
Prci10g0302 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 404 IPR027417 -
Prci10g0302 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 186 354 IPR014001 -
Prci10g0302 734 MobiDBLite consensus disorder prediction 1 75 - -
Prci10g0302 734 CDD SF2_C_SNF 486 620 - -
Prci10g0302 734 PANTHER SNF2/RAD54 HELICASE FAMILY 16 680 - -
Prci10g0302 734 SMART ultradead3 170 365 IPR014001 -
Prci10g0302 734 FunFam Chromatin complex subunit A 106 414 641 - -
Prci10g0302 734 Pfam SNF2-related domain 177 474 IPR000330 GO:0005524|GO:0140658
Prci10g0302 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 500 663 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0302 Prci-Chr10 1989220 1995598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0302 148 631 RAD5 or RAD16-like Gene Family AT1G02670 25.627 7.92e-40 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci10g0302 SNF2_N 2.8e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0302 K19001 - qsu:111991807 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0302 10 1989220 1995598 Prci10g0302 10 1989220 1995598 ECH