Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0290 ATGATGCACCGTTGCTGTGGCTCCCAGGGGCACGTGATTGGACCGTGTACATGTGGTATGATTCACGGCCAAAACAACTCCTTCTCCGTGCTATTCTCGATGCCCAACCACAACCATAAATCCTATGGTGACTGCGACATGTATTCTTTCACCCCCTCTCCTTCCTCTTCTGTTGACTGCACCCTCTCCCTTGGCACCCCCTCGACCCGTTTATCCGTAGACGAAGAAAAACGCAATCGCCATGACCATCGCTCTGTTTCAAACTTCTGCTGGGATTTATTACAATCCAAACACACCTCTCACTCCCACACCAAGTCCGGTCGCGGCGCTAATAGTAGTAACTCTTCCGGTGATCCCCTCCTTGCTCGTCGTTGTGCCAACTGCGACACCACTTCCACTCCCCTCTGGAGAAACGGCCCTAGAGGCCCCAAGTCTCTATGCAATGCCTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGGGCAAGTGCTGTAGCCGCCACTACGGCGGCCAACTCAGGCAGTGTCATGGAGTCGGCGCCGATGTACACCGGTCAGCACAACACTTCGTGGTACGCGCACTCTCAAAGCCAGAAAATGCAGTGCATCTCTCCGGGGATGGGAAACGAGTTTCGCGTCTCGGACGACGCCGACCGCGGCATTCCGTTTCTCTCTTGGAGACTCAACGTTTCGGACAGACCGAGCCTCGTTCATGATTTCACGAGATGA 726 0.5413 MMHRCCGSQGHVIGPCTCGMIHGQNNSFSVLFSMPNHNHKSYGDCDMYSFTPSPSSSVDCTLSLGTPSTRLSVDEEKRNRHDHRSVSNFCWDLLQSKHTSHSHTKSGRGANSSNSSGDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAVAATTAANSGSVMESAPMYTGQHNTSWYAHSQSQKMQCISPGMGNEFRVSDDADRGIPFLSWRLNVSDRPSLVHDFTR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0290 241 ProSiteProfiles GATA-type zinc finger domain profile. 119 155 IPR000679 GO:0006355|GO:0043565
Prci10g0290 241 SMART GATA_3 119 171 IPR000679 GO:0006355|GO:0043565
Prci10g0290 241 Gene3D - 121 198 IPR013088 GO:0006355|GO:0008270
Prci10g0290 241 CDD ZnF_GATA 124 156 IPR000679 GO:0006355|GO:0043565
Prci10g0290 241 Pfam GATA zinc finger 125 159 IPR000679 GO:0006355|GO:0043565
Prci10g0290 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 122 160 - -
Prci10g0290 241 PANTHER GATA TRANSCRIPTION FACTOR 18 11 241 IPR044272 GO:0003700|GO:0009908
Prci10g0290 241 ProSitePatterns GATA-type zinc finger domain. 125 150 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0290 Prci-Chr10 1843402 1844993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0290 17 241 C2C2-Gata Transcription Factor Family AT3G50870 44.178 1.07e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci10g0290 GATA 5.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0290 - - gmx:100790571 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0290 10 1843402 1844993 Prci5g0101 5 1694976 1696607 CCT
Prci10g0290 10 1843402 1844993 Prci10g0290 10 1843402 1844993 ECH