Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0285 ATGGAACTGAGTGGCTTAGATAAGGAAATAGAGATGCCATTACCAACCACTTCAGGTTGTAATCCCTCCAACAGGGACTCATCTTCTTCTCCAACTCTAGCTTCAACAGTAGGGGAGACGAGTAGTGATCAACCCCTTCAAACTTCAGACCACTATCATCCTCATCATCCTCCTTCTCTGCCATCGAACCCACTCCAGCAATTTCAGAGAAACACAAGAGATCCAGATCCGCCGAGCGTAACAGCGATCACACCAATTGCTAGCAGATCAAACCCAAGACCAGCAACAGGGACTACAGTAAGGTACAGAGAATGCTTGAAGAATCATGCGGCGAGCATGGGGGGACACATCGTGGACGGATGCGGCGAGTTCATGCCAAGCGGAGAAGGCACTCCGCAATCCTTGATATGTGCTGCTTGTGACTGCCACCGGAATTTTCACCGGAAAGAGACCGAAGGAGGGCCGTTCCCGCCATTTATGATGGCCTTCGGCGGCGGCAGCGGGGCGGCGGAGTCTTCGAGTGAAGATCTGAACATGTTTCAGTATAATGATGCGGGCGGGCAAGGGTCAGTACAGCCGGTACCGTCATCGAAGAAGAGGTTTAGGACCAAGTTCAGCCAGCAGCAGAAGGATAGGATGATGGAGTTTGCGGAGAAGTTGGGATGGAGGATCCAGAAACATGACGAGCAAGAAGTGCAGCAGTTTTGCAATCAAGTGGGTGTGAAGCGGCAGGTCTTCAAGGTTTGGATACACAATAACAAGCAGGCCATGAAGAAGCACCAAATATTTGACGGAAGCTGA 801 0.5094 MELSGLDKEIEMPLPTTSGCNPSNRDSSSSPTLASTVGETSSDQPLQTSDHYHPHHPPSLPSNPLQQFQRNTRDPDPPSVTAITPIASRSNPRPATGTTVRYRECLKNHAASMGGHIVDGCGEFMPSGEGTPQSLICAACDCHRNFHRKETEGGPFPPFMMAFGGGSGAAESSSEDLNMFQYNDAGGQGSVQPVPSSKKRFRTKFSQQQKDRMMEFAEKLGWRIQKHDEQEVQQFCNQVGVKRQVFKVWIHNNKQAMKKHQIFDGS 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0285 266 Gene3D - 185 259 - -
Prci10g0285 266 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 75 256 - -
Prci10g0285 266 ProSiteProfiles 'Homeobox' domain profile. 196 260 IPR001356 GO:0003677
Prci10g0285 266 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Prci10g0285 266 MobiDBLite consensus disorder prediction 1 98 - -
Prci10g0285 266 Pfam ZF-HD protein dimerisation region 100 151 IPR006456 -
Prci10g0285 266 MobiDBLite consensus disorder prediction 16 48 - -
Prci10g0285 266 FunFam Zinc-finger homeodomain protein 2 186 259 - -
Prci10g0285 266 SUPERFAMILY Homeodomain-like 188 260 IPR009057 -
Prci10g0285 266 MobiDBLite consensus disorder prediction 62 97 - -
Prci10g0285 266 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 102 150 IPR006456 -
Prci10g0285 266 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 101 150 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0285 Prci-Chr10 1806265 1809873 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0285 87 262 ZF-HD Transcription Factor Family AT2G18350 55.556 4.36e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci10g0285 ZF-HD_dimer 6.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0285 - - gmx:100800005 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0285 10 1806265 1809873 Prci5g0093 5 1648606 1650210 CCT
Prci10g0285 10 1806265 1809873 Prci10g0285 10 1806265 1809873 ECH
Prci5g0093 5 1648606 1650210 Prci10g0285 10 1806265 1809873 ECH