Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci10g0285 | ATGGAACTGAGTGGCTTAGATAAGGAAATAGAGATGCCATTACCAACCACTTCAGGTTGTAATCCCTCCAACAGGGACTCATCTTCTTCTCCAACTCTAGCTTCAACAGTAGGGGAGACGAGTAGTGATCAACCCCTTCAAACTTCAGACCACTATCATCCTCATCATCCTCCTTCTCTGCCATCGAACCCACTCCAGCAATTTCAGAGAAACACAAGAGATCCAGATCCGCCGAGCGTAACAGCGATCACACCAATTGCTAGCAGATCAAACCCAAGACCAGCAACAGGGACTACAGTAAGGTACAGAGAATGCTTGAAGAATCATGCGGCGAGCATGGGGGGACACATCGTGGACGGATGCGGCGAGTTCATGCCAAGCGGAGAAGGCACTCCGCAATCCTTGATATGTGCTGCTTGTGACTGCCACCGGAATTTTCACCGGAAAGAGACCGAAGGAGGGCCGTTCCCGCCATTTATGATGGCCTTCGGCGGCGGCAGCGGGGCGGCGGAGTCTTCGAGTGAAGATCTGAACATGTTTCAGTATAATGATGCGGGCGGGCAAGGGTCAGTACAGCCGGTACCGTCATCGAAGAAGAGGTTTAGGACCAAGTTCAGCCAGCAGCAGAAGGATAGGATGATGGAGTTTGCGGAGAAGTTGGGATGGAGGATCCAGAAACATGACGAGCAAGAAGTGCAGCAGTTTTGCAATCAAGTGGGTGTGAAGCGGCAGGTCTTCAAGGTTTGGATACACAATAACAAGCAGGCCATGAAGAAGCACCAAATATTTGACGGAAGCTGA | 801 | 0.5094 | MELSGLDKEIEMPLPTTSGCNPSNRDSSSSPTLASTVGETSSDQPLQTSDHYHPHHPPSLPSNPLQQFQRNTRDPDPPSVTAITPIASRSNPRPATGTTVRYRECLKNHAASMGGHIVDGCGEFMPSGEGTPQSLICAACDCHRNFHRKETEGGPFPPFMMAFGGGSGAAESSSEDLNMFQYNDAGGQGSVQPVPSSKKRFRTKFSQQQKDRMMEFAEKLGWRIQKHDEQEVQQFCNQVGVKRQVFKVWIHNNKQAMKKHQIFDGS | 266 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci10g0285 | 266 | Gene3D | - | 185 | 259 | - | - | |
Prci10g0285 | 266 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 75 | 256 | - | - | |
Prci10g0285 | 266 | ProSiteProfiles | 'Homeobox' domain profile. | 196 | 260 | IPR001356 | GO:0003677 | |
Prci10g0285 | 266 | NCBIfam | homeobox domain, ZF-HD class | 198 | 255 | IPR006455 | - | |
Prci10g0285 | 266 | MobiDBLite | consensus disorder prediction | 1 | 98 | - | - | |
Prci10g0285 | 266 | Pfam | ZF-HD protein dimerisation region | 100 | 151 | IPR006456 | - | |
Prci10g0285 | 266 | MobiDBLite | consensus disorder prediction | 16 | 48 | - | - | |
Prci10g0285 | 266 | FunFam | Zinc-finger homeodomain protein 2 | 186 | 259 | - | - | |
Prci10g0285 | 266 | SUPERFAMILY | Homeodomain-like | 188 | 260 | IPR009057 | - | |
Prci10g0285 | 266 | MobiDBLite | consensus disorder prediction | 62 | 97 | - | - | |
Prci10g0285 | 266 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 102 | 150 | IPR006456 | - | |
Prci10g0285 | 266 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 101 | 150 | IPR006456 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci10g0285 | Prci-Chr10 | 1806265 | 1809873 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci10g0285 | 87 | 262 | ZF-HD Transcription Factor Family | AT2G18350 | 55.556 | 4.36e-68 | 210 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Prci10g0285 | ZF-HD_dimer | 6.8e-30 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci10g0285 | - | - | gmx:100800005 | 262.692 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Prci10g0285 | 10 | 1806265 | 1809873 | Prci5g0093 | 5 | 1648606 | 1650210 | CCT | |
Prci10g0285 | 10 | 1806265 | 1809873 | Prci10g0285 | 10 | 1806265 | 1809873 | ECH | |
Prci5g0093 | 5 | 1648606 | 1650210 | Prci10g0285 | 10 | 1806265 | 1809873 | ECH |