Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0279 ATGGTTACTGGTACCAGTGAAGTAGCACACAAGCTGCCAAATCCCTGCTCGTTCAAGGTGCATCATGCAATGTGCATGGAACTCATGAGATTAGTTGATAGAATCTCAAAGATATTACCAGATCTAGAGGCAACACGACCTCGATGCTTGTCGGGAATACAGTCTCTGTGCTCTCTGAACACTGCGATTGATAAGGCCAAACTCCTTCTGCAACATTGCTCTGATTGTAGCAAACTATACCTGGCATTCACGGGACATACGGTCCTCTTAAGATGCTTAAAGGCAAGAAATTCTTTTGAGAAAAGCTTGGACAAAATTCAGAGTATGGTTACAGTTTTATTGGCGGCAGAGGTTTCTCAAATAATTGATGATCTGGGATGTGCGACGTTTGTCCTGGAATCATCCGAAGAAGAGGCTGGGAGGGTTGTGAGAGAACTGCTGCAGAAAAGTCCTTCGACATCGGATTCAACCGAAGATTACGAGATTAAAGCTCTTCAGATTGCAGCAGCAAGACTTAATATTACATCCCCAAAGGCCATCTTAATAGAGAAAAGATCTATTAAGAAGTTGCTAAATAAACTTGGGCCAAATGAACCAACGAAAAAGATGATCTTGAGGTATCTTTGGTATCTATTGAAAAAGCATGGAAACCATATCATGGGAGGGAAAATTGGAAAGGTCCATGCTCTAAGCAATGAACCAATTGCAACTGATAAATCAGCTCACAACCATGAGTTGAGCAGAGCTGTCTCCCCTGAGGGGTACAGGTGTCCGATATCTTCAAAGGTGATGTACGATCCTGTAGTCATTGCTTCTGGGGAAACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAAGGTCATGATACATGCCCAAAAACTGGGAAGAAATTGGCCCATATGTCTTTGACACCAGATATTGCAATGAAGGACTTAATATCAGACTGGTGCAGAGATAATGGTGTTACCGTTACTGACCCTCGCAGGCGAGCAGCATATTTCAACTCACGGGAATCTTCCTTTGCTTCCATTAGGAGCTTTAACGTTTCTTTGAATAAATTACACTTACCAGTGGATCTTAGTATTGTGTCACTGGGATCAACAGATAGTTATGATTCAGATTCCTCAAAGAATTTACCTGCTCATGACTTAAATTTAATGCTCATAAGATCTAATGACAATTCTTACATACATCAATCTCATTCACACATAGATGGTGTAGATTTAATGCTTTTATCTCAGTTCCCCGACCTTCAATGGGATTCTCAATGCAAAGTCATTGAAGATCTGAAAGTTTGTTTGAAGAGCAATTGCCAAGCTTTTTGTTCTTTGTCGTATGACGATTTCATTGAATCACTCATCAAATTTCTGAATAATGCATATGATCTGCAAGAGACAAAAGCTCTGAAAGCAGGAGCTCAGCTGCTCTTTGAATTTCTGAACAAGCACAGAAACAACCTAGTATATCTAAGTGATGATTCGTTCAGTATGTTGGGCAATCTTTTTGACTCACAAGTTAAAGAAGAAGCTCTTGCCATAATGGAAAAACTGTCCGAGTGTGAGCATATTAGAGCTAAAATGGCAGCATCCAGTGCACTCACTCCCATTTTAAAGATCCTTGACTCGGGGAGCAGAGAGCTCCAGCAACAATCTCTTCGAATATTGTACAATTTGTCCTTCAACAGTGAAGCTTGTCGCCACATGGTCCCTCTCCAGTGCGTCATCCCAGGATTACTGCCATTTTTTAAAGATGGGACTTCGTTAAGATACTGCATATGCATGATGAAAAACCTTTGTGATACAGAAGAGGGCAGGGTTTCTGTTGCCAAAACCGAAGGATGCATATCTGCTGTTGTTGAAATACTTGAGACTGACAGTGACGAGGAACAAGAACATGCATTGGCTGTCCTACTCTCTTTATGCTCTATAAGTTTGGATTATTGTCGGCTGGTCATGGAACAAAGGGATTGGGTTATTCCCTCCCTTTTCTTTATCGCGCAAAATGGCAAAGACAAAGGAAAGGCGAGTGCATTGAAGTTGATCGGACTTTTGACTGATATTGTAAGTGTTGAAAATGAAGAATGCTTGAAATCAACTCTCAGCACTTCTCAAGAACGTAACCATAGCTCTCAACAAAAGAAATCATCAAAAATATCAGACTCTTTCAAGAAGTTTTTGGTCGTGTGCTTTACAGGCAAGAGATGA 2208 0.4081 MVTGTSEVAHKLPNPCSFKVHHAMCMELMRLVDRISKILPDLEATRPRCLSGIQSLCSLNTAIDKAKLLLQHCSDCSKLYLAFTGHTVLLRCLKARNSFEKSLDKIQSMVTVLLAAEVSQIIDDLGCATFVLESSEEEAGRVVRELLQKSPSTSDSTEDYEIKALQIAAARLNITSPKAILIEKRSIKKLLNKLGPNEPTKKMILRYLWYLLKKHGNHIMGGKIGKVHALSNEPIATDKSAHNHELSRAVSPEGYRCPISSKVMYDPVVIASGETYERMWIQKWFDEGHDTCPKTGKKLAHMSLTPDIAMKDLISDWCRDNGVTVTDPRRRAAYFNSRESSFASIRSFNVSLNKLHLPVDLSIVSLGSTDSYDSDSSKNLPAHDLNLMLIRSNDNSYIHQSHSHIDGVDLMLLSQFPDLQWDSQCKVIEDLKVCLKSNCQAFCSLSYDDFIESLIKFLNNAYDLQETKALKAGAQLLFEFLNKHRNNLVYLSDDSFSMLGNLFDSQVKEEALAIMEKLSECEHIRAKMAASSALTPILKILDSGSRELQQQSLRILYNLSFNSEACRHMVPLQCVIPGLLPFFKDGTSLRYCICMMKNLCDTEEGRVSVAKTEGCISAVVEILETDSDEEQEHALAVLLSLCSISLDYCRLVMEQRDWVIPSLFFIAQNGKDKGKASALKLIGLLTDIVSVENEECLKSTLSTSQERNHSSQQKKSSKISDSFKKFLVVCFTGKR 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0279 735 PANTHER U BOX DOMAIN-CONTAINING 23 685 - -
Prci10g0279 735 ProSiteProfiles U-box domain profile. 250 324 IPR003613 GO:0004842|GO:0016567
Prci10g0279 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 326 IPR013083 -
Prci10g0279 735 SMART Ubox_2 254 317 IPR003613 GO:0004842|GO:0016567
Prci10g0279 735 Pfam Armadillo-like 503 574 IPR006911 -
Prci10g0279 735 SUPERFAMILY ARM repeat 503 694 IPR016024 -
Prci10g0279 735 SUPERFAMILY RING/U-box 245 327 - -
Prci10g0279 735 CDD RING-Ubox_PUB 252 304 IPR045210 -
Prci10g0279 735 Gene3D - 435 711 IPR011989 -
Prci10g0279 735 Pfam U-box domain 252 321 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0279 Prci-Chr10 1767341 1772618 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0279 15 695 U-box Gene Family AT4G36550 38.450 8.93e-138 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0279 - - pcin:129322186 1446.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0279 10 1767341 1772618 Prci5g0087 5 1612172 1617682 CCT
Prci10g0279 10 1767341 1772618 Prci10g0279 10 1767341 1772618 ECH
Prci5g0087 5 1612172 1617682 Prci10g0279 10 1767341 1772618 ECH