Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci10g0228 | ATGTCAAACACGAAGCTGGAGCAATGGCAATGGGAAAACGCCACGGCCGGCGCCGTTGCAGGGTTTGCCACCGTCGCTGTCATGCATCCCCTGGACGTTGTCCGAACTAGGTTCCAAGTTAATGACGGTCGAGTTCCCCTTGTTCCGAGTTATAAGAATACTGCTCACGCCATTTTCACCATTGCTCGCTCAGAGGGCTTAAGAGGTCTGTATGCAGGCTTGCTTCCTGCAGTCCTTGGGTCAACTATTTCGTGGAGTCTATACTTCTATTTCTATGACAAAGCCAAACAAAGGTATGCAAGGAACAGGGAGGAGAAGTTGAGCCCTGGTTATCATCTCGCTTCAGCTGCTGAAGCAGGGACTTTGGTTTGCTTATGCACAAATCCTGTTTGGCTAGTAAAAACAAGAATGCAGCTTCAGACTCCTCTGCATCAAACACAACCGTATAATGGGATTTATGATGCGTTTAAAACCATTTTGAAAGAAGAAGGATTGAGGGCACTGTACAGAGGACTTGTTCCTAGTCTTTTTCTGCAGGTCTCTCATGGTGCTATGCAGTTCATGGTATATGAAGAGTTTCGGAAAATGGTTATAGACTTGAAAAGCTCGGAAAGTGAAATGCGTCATCAAAACCCTGATATGCTGTTGAATTCTATGGATTACGCTGTTCTTGGAGCAACCTCAAAAGTTGCTGCCACTCTTATAAGCTATCCATTTCAGGTTCTACGGTCTCGATTGCAGCAACGGCCTAGTGTTGGTGGGATTCCAAGATATATGGATAGCTGGCATGTCGTGAAGGAAACTGCACGGTTTGAAGGTGTTCGAGGTTTTTACAAAGGGATCACCCCAAATCTATTGAAAAATGTTCCTGCTTCATCAGTAACATTTATTGTCTATGAAAATGTGCTTAAATTGCTTAAACTAACTAGAAGGAATGACTAG | 942 | 0.4437 | MSNTKLEQWQWENATAGAVAGFATVAVMHPLDVVRTRFQVNDGRVPLVPSYKNTAHAIFTIARSEGLRGLYAGLLPAVLGSTISWSLYFYFYDKAKQRYARNREEKLSPGYHLASAAEAGTLVCLCTNPVWLVKTRMQLQTPLHQTQPYNGIYDAFKTILKEEGLRALYRGLVPSLFLQVSHGAMQFMVYEEFRKMVIDLKSSESEMRHQNPDMLLNSMDYAVLGATSKVAATLISYPFQVLRSRLQQRPSVGGIPRYMDSWHVVKETARFEGVRGFYKGITPNLLKNVPASSVTFIVYENVLKLLKLTRRND | 313 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci10g0228 | 313 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 8 | 98 | IPR018108 | - | |
| Prci10g0228 | 313 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 107 | 196 | IPR018108 | - | |
| Prci10g0228 | 313 | Pfam | Mitochondrial carrier protein | 10 | 102 | IPR018108 | - | |
| Prci10g0228 | 313 | Pfam | Mitochondrial carrier protein | 107 | 198 | IPR018108 | - | |
| Prci10g0228 | 313 | Pfam | Mitochondrial carrier protein | 220 | 307 | IPR018108 | - | |
| Prci10g0228 | 313 | Gene3D | Mitochondrial carrier domain | 51 | 312 | IPR023395 | - | |
| Prci10g0228 | 313 | FunFam | Folate transporter 1, chloroplastic | 104 | 311 | - | - | |
| Prci10g0228 | 313 | FunFam | folate transporter 1, chloroplastic isoform X1 | 1 | 103 | - | - | |
| Prci10g0228 | 313 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 216 | 305 | IPR018108 | - | |
| Prci10g0228 | 313 | SUPERFAMILY | Mitochondrial carrier | 11 | 301 | IPR023395 | - | |
| Prci10g0228 | 313 | PRINTS | Mitochondrial carrier protein signature | 26 | 40 | IPR002067 | GO:0055085 | |
| Prci10g0228 | 313 | PRINTS | Mitochondrial carrier protein signature | 225 | 247 | IPR002067 | GO:0055085 | |
| Prci10g0228 | 313 | PRINTS | Mitochondrial carrier protein signature | 169 | 187 | IPR002067 | GO:0055085 | |
| Prci10g0228 | 313 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 10 | 309 | IPR044712 | GO:0006862|GO:0055085 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci10g0228 | Prci-Chr10 | 1573704 | 1581684 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci10g0228 | 30 | 306 | Chloroplast and Mitochondria Gene Families | AT2G47490 | 36.299 | 3.73e-46 | 156 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci10g0228 | K15115 | - | zju:107424547 | 503.442 |