Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0200 ATGGACGCTTTCAGCCCAGATTCAATGCTTTACCAAACTCACCCACCTCTTCTCTTCTCTCCTTCCATTTCTCAGCCCCCAACCTCCTCTCCCTTTTCTCGTCTCTCTCTTCTTCAGGCCGGAACCCCAATGAAGTGCGTCCAGGCAGCCTTGAAGACCAGTTTCAGCAAAGACATGGCCCTCAAACTTAACCCCCTATCTTCTGTAGACGACTTCTCCGCCTTCAGTGTCCAGAATGCCGTCCCTTCCGACGACTTCTCCGTCGACGAACTCCTCGATTTTTCCCACCTGGACGACCCTTCCGAGGATGACCAACACCCTAAGGCTGACTCTGCTTCTGTTTCCCCTCCACCAGCGGACCAAAGTCATGAAATTTCTCACTCTGCCTTCGTCAAAGACGATGTTAACTCCTTGCCGTCCAGCGAACTCAGCGTTCCGGCCGATGATTTGGAAAACTTGGAGTGGTTGTCTCATTTTGTCGAAGATTCCTTCTCGGTATATTCCACCGCGTATCCCGCCGGAACTCTAATGGGAAGACCCAAGAGCCTTGCCGAACAAAGGCCCAAACCGGACGGCCATCTTTCGGCTCACCCTTGTTTTACAACTCCGGTCCCGGGCAGGGCCAGAAGCAAGAGAACGAGAGTCGGAGTTCGGGTCTTGCCTTTCAGGTGTCCATCCTTGACCGAATCATCCTCGACCTCCACCTCGTCTTCCTCCTCCTCGTCCCCCACGAGTCCATGGGTCATCTACCCCAACGCAGCGCCCGAGCAAGCCTGCTCCGAGGGCAGGCCCCTGGCAAAAAGACCCAAGAAAAAGCCGGCGCCAGAGGTCGGTGGGGGGACCGACGGAGCAGCGCAGACGCCGCGCCGGTGCACCCATTGCGGGGTCCACAAGACACCGCAGTGGCGAGCCGGGCCGCACGGAGCGAAGACGCTGTGCAACGCGTGCGGGGTCCGATACAAGTCGGGGCGGCTGCTACCGGAATACAGGCCGGCGTGCAGCCCGACGTTCTCGAGCGAACTGCACTCGAACCACCACCGTAAAGTGCTGGAGATGCGGCGGAAGAAGGAGGGAGCGGGCGGAGGCGAGTCCGATTCGGGTGGGGGCCCGAGCCCGGCAGTGCCGAGTTTTTGA 1134 0.5882 MDAFSPDSMLYQTHPPLLFSPSISQPPTSSPFSRLSLLQAGTPMKCVQAALKTSFSKDMALKLNPLSSVDDFSAFSVQNAVPSDDFSVDELLDFSHLDDPSEDDQHPKADSASVSPPPADQSHEISHSAFVKDDVNSLPSSELSVPADDLENLEWLSHFVEDSFSVYSTAYPAGTLMGRPKSLAEQRPKPDGHLSAHPCFTTPVPGRARSKRTRVGVRVLPFRCPSLTESSSTSTSSSSSSSPTSPWVIYPNAAPEQACSEGRPLAKRPKKKPAPEVGGGTDGAAQTPRRCTHCGVHKTPQWRAGPHGAKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEGAGGGESDSGGGPSPAVPSF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0200 377 MobiDBLite consensus disorder prediction 341 361 - -
Prci10g0200 377 MobiDBLite consensus disorder prediction 180 212 - -
Prci10g0200 377 FunFam GATA transcription factor 282 365 - -
Prci10g0200 377 ProSitePatterns GATA-type zinc finger domain. 291 316 IPR000679 GO:0006355|GO:0043565
Prci10g0200 377 MobiDBLite consensus disorder prediction 95 124 - -
Prci10g0200 377 CDD ZnF_GATA 290 338 IPR000679 GO:0006355|GO:0043565
Prci10g0200 377 SMART GATA_3 285 339 IPR000679 GO:0006355|GO:0043565
Prci10g0200 377 Pfam GATA zinc finger 291 325 IPR000679 GO:0006355|GO:0043565
Prci10g0200 377 MobiDBLite consensus disorder prediction 95 109 - -
Prci10g0200 377 ProSiteProfiles GATA-type zinc finger domain profile. 285 321 IPR000679 GO:0006355|GO:0043565
Prci10g0200 377 MobiDBLite consensus disorder prediction 227 290 - -
Prci10g0200 377 PANTHER GATA TRANSCRIPTION FACTOR 78 360 - -
Prci10g0200 377 MobiDBLite consensus disorder prediction 227 248 - -
Prci10g0200 377 Gene3D - 281 358 IPR013088 GO:0006355|GO:0008270
Prci10g0200 377 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 286 347 - -
Prci10g0200 377 MobiDBLite consensus disorder prediction 340 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0200 Prci-Chr10 1352484 1354601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0200 48 377 C2C2-Gata Transcription Factor Family AT5G66320 51.335 5.22e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci10g0200 GATA 1.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0200 - - pmum:103340171 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0200 10 1352484 1354601 Prci5g0036 5 1075372 1076676 CCT
Prci5g0036 5 1075372 1076676 Prci10g0200 10 1352484 1354601 ECH
Prci10g0200 10 1352484 1354601 Prci10g0200 10 1352484 1354601 ECH