Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0194 ATGCGAACGCTTTGCGACGCTTGTGAGAGCGCTGCTGCCATCGTATTCTGCGCCGCTGATGAGGCCGCGCTCTGCCGTGCCTGCGACGAAAAGGTTCACATGTGTAACAAGCTAGCTAGCCGACATATCAGGGTTGGCCTTGCCAGTCCAAGTGATGTGCCACGCTGTGACATATGTGAAAATGCACCTGCTTTCTTTTATTGCGAGACAGATGGAACTTCCCTATGTTTGCAATGTGACATGATAGTTCATGTTGGAGGTAAAAGAACACATGGAAGATATCTTCTTTTCAGGCAGCGGGTTGAGTTTCCAGGAGATAAACCTGGTCATGCAGAAAACCCAGCTTCACAGCCTCTGGATGCTGTTGAGACCAAACGGGGCCAAAATTCGTTGCTCAAAATAAAAATGGGAGAGAAACAACAAAATCACAGGATGCCAACCCCAGAACAGGATGCTGATGGGCTTGCCAAGATGGATACTAAAATGATTGATCTGAACATGAAGCCTCAAAGAATACATGAACAAGGGTCAAATAATCAGCCATGA 546 0.4707 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHIRVGLASPSDVPRCDICENAPAFFYCETDGTSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKPGHAENPASQPLDAVETKRGQNSLLKIKMGEKQQNHRMPTPEQDADGLAKMDTKMIDLNMKPQRIHEQGSNNQP 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0194 181 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Prci10g0194 181 Pfam B-box zinc finger 3 34 IPR000315 GO:0008270
Prci10g0194 181 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Prci10g0194 181 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Prci10g0194 181 CDD Bbox1_BBX-like 56 96 - -
Prci10g0194 181 Gene3D Classic Zinc Finger 2 91 - -
Prci10g0194 181 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 147 - -
Prci10g0194 181 FunFam B-box zinc finger protein 19 2 92 - -
Prci10g0194 181 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Prci10g0194 181 CDD Bbox1_BBX-like 4 47 - -
Prci10g0194 181 SMART bboxneu5 51 96 IPR000315 GO:0008270
Prci10g0194 181 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0194 Prci-Chr10 1274601 1277850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0194 1 180 C2C2-CO-like Transcription Factor Family AT4G38960 63.889 7.06e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Prci10g0194 zf-B_box 9.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0194 - - gmx:100780544 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0194 10 1274601 1277850 Prci5g0030 5 898830 901454 CCT
Prci5g0030 5 898830 901454 Prci10g0194 10 1274601 1277850 ECH
Prci10g0194 10 1274601 1277850 Prci10g0194 10 1274601 1277850 ECH
Prci14g0188 14 1586343 1588294 Prci10g0194 10 1274601 1277850 ECH