Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0187 ATGTTCCCGATTGTTCCCTGGCTATATAAAGCTCAATGTCCCGGTCGATCGGCGCAGAAACCATCGCTGGTGTGCTCCGTTCAAAAACCTCTCTTCTGTTCTTGTATCTCCATTTCTGTGACTCTTTATCTATTTGTGATGTCAACCCCCGGAGAAGGTGATCGGCCTGCCGTTGATCTACCTGTGGAGGAGTCGAAGCCAGTGACCAAGGAGAAGAAACCCAAGGTTCCAAAAGAGAAGAAGCCCAAGCAGGCGAAAACGGTTTCTCATCCTCCGTATTTTCAGATGATTAAGGAAGCTTTATTGGCTCTGAATGAGAAGGCTGGTTCCAGCCCCTATGCCATAGCCAAGTATATGGAGGAAAAGCATAAGTCGGTTCTTCCCGCGAATTTCAGGAAGATCTTGGCTCTTCAGCTGAAGAACCAAGCAACGAGAGGGAAGCTCGTCAAGATCAAGGCTTCCTACAAACTATCCTCTGAGGCTGGCAAGAGGGACAGGGAAATCATCGGCAAGGTCACAAGGTCTTCCACTGCACAGCAGACTCAGCGCTCTAAGCGAAGCGTGGCTAAGAAAACAGAGACAGGTAAGAAGCCTAGAAAGGCGGCGAGGAAAATGGTTGGGATGAAGAAAACGAAGAAATCATCCAACCCTGCGAAGCCGAAGCAGCTCAAGTCTCTAGATCTTCATCCAAGAGGGCCAGGAATGTTACTGCCTCAGCTTCTTGAAGTCTCTGGTCGAAGTAGAGGCAGAACTTGTCAGTGA 762 0.4908 MFPIVPWLYKAQCPGRSAQKPSLVCSVQKPLFCSCISISVTLYLFVMSTPGEGDRPAVDLPVEESKPVTKEKKPKVPKEKKPKQAKTVSHPPYFQMIKEALLALNEKAGSSPYAIAKYMEEKHKSVLPANFRKILALQLKNQATRGKLVKIKASYKLSSEAGKRDREIIGKVTRSSTAQQTQRSKRSVAKKTETGKKPRKAARKMVGMKKTKKSSNPAKPKQLKSLDLHPRGPGMLLPQLLEVSGRSRGRTCQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0187 253 CDD H15 87 163 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0187 253 SMART h15plus2 87 154 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0187 253 MobiDBLite consensus disorder prediction 53 88 - -
Prci10g0187 253 MobiDBLite consensus disorder prediction 196 217 - -
Prci10g0187 253 Pfam linker histone H1 and H5 family 90 156 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0187 253 Gene3D - 83 168 IPR036388 -
Prci10g0187 253 MobiDBLite consensus disorder prediction 57 75 - -
Prci10g0187 253 SUPERFAMILY "Winged helix" DNA-binding domain 86 164 IPR036390 -
Prci10g0187 253 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 89 159 IPR005818 GO:0000786|GO:0003677|GO:0006334
Prci10g0187 253 MobiDBLite consensus disorder prediction 173 253 - -
Prci10g0187 253 PANTHER HISTONE H1 67 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0187 Prci-Chr10 1197819 1199020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0187 52 164 Single Myb Histone (SMH) Gene Family AT1G72740 32.773 7.11e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0187 K11275 - gmx:100500169 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0187 10 1197819 1199020 Prci10g0187 10 1197819 1199020 ECH