Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0185 ATGCGAACTAGAAGCTCTGATGCTTCCAAAACTGCGGCGGCTAAGAAGACACCCCCGACGAGGAAATCCACACCTAAAAGTCCGGCGAACTCACAATCTCCCCAGGTCAAGCGCACCTCTGCGATCAGAACCAGGCAGGCAAAGAAGAACGAGGCCTCGCCCTTACAAAACACAAACTTTTATGGGGAACCGGGGCAATCATCTGGGGAGGCAAAAGCAGCGGGTGATGCTTCTCAGGTGACACCAGATGCAAATGTTGTTACAGCTGCAAAGTCAACGCCGAAGAGGACGCTGAAGAGGGCAGTGGGAAGACCTAGGAATTCAACTAAAGCAGTTACTACCCAGGAAAAGGAAGAACAAGTGGAGGCAATAGCTGGTGAAACACCAAAAGTGGACAATATAGAAGTAGCCCAGAAATCGGTGGAGCCTCTATATGTTGAGGAAGTCAAAGCAGATGAAATTGAAAGTAAAAAAGCGGGGGAACAAGGTGTTGAGTGTGTTAGACAATCCGCAGGGAATGAACAATATCCTAAGGAAGGGGATGATGCTAGTGCTTGTGGATTAGCAGAAAAGGAAAGAGACATAGTTGTAGCATCTGCCTCCCAAGGTGACCCTATTTTGTTGAATCAAGAAGAACCTACCATAGTGGAGCTCTCTGAATCTCTGGAGAATGGAGAGCCTGCTGGAGCAAAAGAAGGAGAACAAACAAATGAGGAGGACGGGGAAAAGGTATCAAAAGCATCAATAGAAAAACAGACAACTAGTATTGGACAGAAAGAGAAATGTGATGCTGACTCTGTCACCATGGAAATGAAAGACAAAGGAGAGCAAATGAAGGAAGAGGATGGAGAAAAAGAATCAGAAAAATCAATGGAAAAGAAGGGAGAAAAAGCATCGGAGAAATCAATGCAAGAGGAGACAAATACTGTTGTACATAATCAGGAATCTAAAACTGATTCTGTTGAGAAAGAAATGACAAACCGATTTCTGCAAGATGATGTTAAACCTGAAAAGGAGAATCTAATTGGTGATCAAGGCACCCAAGGTTGTGATGAAAGGATGGATTGTGAAGAACAAGGGGAGGAGGAGCCTGTTGAGGCTGATCCAGAGGAGCCTCTTGAAGAAACCGAGACATTCGATGAGGAATGCAGGGAATTGTCTGCTATGGTGAAGGAGCACAAGATTAAGAAAGAGAATGAAATATTTGTTGGTGGGCTTGATCGTGATGCTACAGAGGAAGATCTTAAAAAGGTTTTTGAGAAGATTGGGGAGGTAGCTGAAGTCAGGCTGCATAAAAATTCTTCAACAAACAAAAATAAGGGCTATGCTTTCTTAAAATTTTCTTGTAAGGAACATGCAAAGAAAGCTTTGTCAGAAATGAAAAACCCTGTTATATGTGGTAAGCGATGTGGCACTGCGCCGAGTGAGGATAATGACACATTATTCTTAGGAAATATATGCAATACATGGACAAAAGAAGCTATCAAACAGAAGTTGAAGGATTATGGTGTTGAGGGTGTTGAAACCATTACACTTGTCCCAGATGTTCACCATGAAGGAGTAAGCCGGGGCTTTGCATTCCTTGAGTTCTCTTGTCATCATGATGCCATGCTTGCTTACAAGAGGCTTCAAAAGCCTGATGTAATCTTTGGTCATGCTGAGCGAACGGCCAAAGTAGCCTTTGCTGAACCTGTACGAGAGCTGGATCCTGAGATTATGGCACAAGTGAAGTCTGTTTTTGTTGATGGTCTCCCTCCTCACTGGGATGAAGGCTGCATTAGGGAGCACTTTAAAGGTTATGGTGAAATTGTACGAATTGTACTTGCCCGGAATATGACTATGGCTAAGAGGAAAGATTTTGGATTTGTTGATTTCTCTACCCATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAGTTCAGAGTTTGTTGATGGAACACAAAAGACAAAAGTGAGAGCTAGACTTTCAAATCCTTTGCCTAAAACACAGGCTGTCAAGGGAGGCATGTGTGGCGGGTTCCGAATTGGTCATGCTCGGAGTGGAGCCTTTCCAAGATCTGAAAGGGGTTTTGCTCGTGGAGGACATGCTGCCAACTGGGGAAATTTTAATAGGGATCGCAATTTTTATCATGGTGGACATGGTCAAATTGGAAGGATGGGTTTCAGGAATGACCATAATCTTGATAATGCTTATCCAGATTTTCATCAGAGGCAATTTGCAGGGGAAAGGATGATTCCTTTGAGAGGAGGACATTATGCAGTTGCTGGTCCATCTAGGCCTTATCTTGACAGAACTTGGTATGGAAACCCTGAGGGTGGTCCAGGTGAACCAATTCCCCCAAGGATGCCATTCTCTCCTGAAGTACAGTTTGACAGGCCTTTTATGGGAAGGCATATTGATGATTCATATTTTTATGAAGACAGTGTGCATGGGGTGAAGCGGCCATTTTATATGACCGACCCAGATCCTAATTACATGGGGCCTGTTGGATTTCGTCCTCGACTGAATTATACAAACCCTGCCTTATTTCATAGCAGTCGTTACCATGATTCTATGGCAGCTGGCGGGGGACAGTACTCACATGATTATTATGGTTCTGATCATGGTGGAAATCCATATTCATCTTTTTATGGGGGTGACAACTCATATGGGCGAAGATACTACTGCTAG 2673 0.4385 MRTRSSDASKTAAAKKTPPTRKSTPKSPANSQSPQVKRTSAIRTRQAKKNEASPLQNTNFYGEPGQSSGEAKAAGDASQVTPDANVVTAAKSTPKRTLKRAVGRPRNSTKAVTTQEKEEQVEAIAGETPKVDNIEVAQKSVEPLYVEEVKADEIESKKAGEQGVECVRQSAGNEQYPKEGDDASACGLAEKERDIVVASASQGDPILLNQEEPTIVELSESLENGEPAGAKEGEQTNEEDGEKVSKASIEKQTTSIGQKEKCDADSVTMEMKDKGEQMKEEDGEKESEKSMEKKGEKASEKSMQEETNTVVHNQESKTDSVEKEMTNRFLQDDVKPEKENLIGDQGTQGCDERMDCEEQGEEEPVEADPEEPLEETETFDEECRELSAMVKEHKIKKENEIFVGGLDRDATEEDLKKVFEKIGEVAEVRLHKNSSTNKNKGYAFLKFSCKEHAKKALSEMKNPVICGKRCGTAPSEDNDTLFLGNICNTWTKEAIKQKLKDYGVEGVETITLVPDVHHEGVSRGFAFLEFSCHHDAMLAYKRLQKPDVIFGHAERTAKVAFAEPVRELDPEIMAQVKSVFVDGLPPHWDEGCIREHFKGYGEIVRIVLARNMTMAKRKDFGFVDFSTHEAAVACVDGVNSSEFVDGTQKTKVRARLSNPLPKTQAVKGGMCGGFRIGHARSGAFPRSERGFARGGHAANWGNFNRDRNFYHGGHGQIGRMGFRNDHNLDNAYPDFHQRQFAGERMIPLRGGHYAVAGPSRPYLDRTWYGNPEGGPGEPIPPRMPFSPEVQFDRPFMGRHIDDSYFYEDSVHGVKRPFYMTDPDPNYMGPVGFRPRLNYTNPALFHSSRYHDSMAAGGGQYSHDYYGSDHGGNPYSSFYGGDNSYGRRYYC 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0185 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 401 469 IPR000504 GO:0003723
Prci10g0185 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 579 643 IPR000504 GO:0003723
Prci10g0185 890 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 549 IPR000504 GO:0003723
Prci10g0185 890 MobiDBLite consensus disorder prediction 232 247 - -
Prci10g0185 890 SMART rrm1_1 400 473 IPR000504 GO:0003723
Prci10g0185 890 SMART rrm1_1 480 557 IPR000504 GO:0003723
Prci10g0185 890 SMART rrm1_1 578 653 IPR000504 GO:0003723
Prci10g0185 890 MobiDBLite consensus disorder prediction 355 376 - -
Prci10g0185 890 MobiDBLite consensus disorder prediction 316 340 - -
Prci10g0185 890 FunFam Heterogeneous nuclear ribonucleoprotein Q 479 563 - -
Prci10g0185 890 SUPERFAMILY RNA-binding domain, RBD 569 682 IPR035979 GO:0003676
Prci10g0185 890 CDD RRM_SF 481 544 - -
Prci10g0185 890 MobiDBLite consensus disorder prediction 1 120 - -
Prci10g0185 890 MobiDBLite consensus disorder prediction 263 303 - -
Prci10g0185 890 CDD RRM_SF 579 643 - -
Prci10g0185 890 MobiDBLite consensus disorder prediction 1 65 - -
Prci10g0185 890 Gene3D - 566 721 IPR012677 -
Prci10g0185 890 Gene3D - 370 478 IPR012677 -
Prci10g0185 890 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 234 889 - -
Prci10g0185 890 CDD RRM_SF 401 470 - -
Prci10g0185 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 577 659 IPR000504 GO:0003723
Prci10g0185 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 399 477 IPR000504 GO:0003723
Prci10g0185 890 FunFam Heterogeneous nuclear ribonucleoprotein Q 564 714 - -
Prci10g0185 890 SUPERFAMILY RNA-binding domain, RBD 399 544 IPR035979 GO:0003676
Prci10g0185 890 Gene3D - 479 563 IPR012677 -
Prci10g0185 890 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 479 564 IPR000504 GO:0003723
Prci10g0185 890 MobiDBLite consensus disorder prediction 204 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0185 Prci-Chr10 1188854 1196053 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0185 401 645 Eukaryotic Initiation Factors Gene Family AT2G23350 24.603 1.80e-14 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0185 - - pcin:129322150 1674.83