Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0182 ATGAAGCGGGCAAGGAAATCGAACAGGGTTTCGTGGGCTCCTGGATTTAATCTGTGTCAGGTGAAGTTGTTCTTATCTGAGGATTGCCCTTCGAAAGTTAGCCAGACATCTCAAGACCTTCTTCAAGCAAAGACATCATCAATTTTGCATTCAAGCACTAATGAATCTTATGATTTACCTCCTGGCTTTGAAGGCAATAATTCTTTGAACCATATTAGGAATGAACTCTCCCACTTTTATCAGATTAAATGGAAAGCTCCTCCCCTGTTTGCTCTCAGTCAAAATTGGCTAGTTGCAGCTGGTGAAGAAAGTAAGGAGAAAGTAGATCAAAAGCTAAGAGAAATGAAGGTGCTTGAAGCAGTATATCCTCGCCCTTCAGCTATTCCTCCAAGTCCATCTGTTTCTTTAGATGTACAGGAGGAAGACTATGATGATAACCTCACTCCTCTTATCCCTATCGTTCCCATTGAGGAAGAAGAGCTTATGGATGTTAACCCTGAATTGCCAGCAACAATTGACACACCCGCCACTTCACAGGCACAAAGTTTGCACCAGTACATATCTACGACAGATAGACCCATATGTTCACAGCCTAGTACCTCGTCCTCTCTAGCCTTAACTGGGACATCTGGTTTGGAAGCAGAACTTGCTGCAGCTTCTGCTGTTGCTGCTGCCATCATGAACAGTAATGAACAAGGCAGCTCAGTTGACATGGATCTACTTGTTAGAATACTTAATGATCCATTATTGATTGCGAAGTTGAAAAGTGTTCATGATGGAGCTGCAGTGACCACTGTGAATACATCGGCAAACATAGTGGGTTTATCTAGTTCTGGATTCAAATGCACTTCTCCATCAGTTCCATCACCTCCGCTTAGACCTGATAAGCCAACTTCTGGGGTTAATCCCTCAAGTACTGTGGGTTTATTTCCTGATTCTGGCTTGGTACCAGCTACTTCATCGGTTCCATTGATGCATGCACTAGATAAGCCAGCGACCCAGTCACTTCCTTTTTCTGGGGCTATACCAGGGAAACTAGCAACTCCTTCAGCTCCATTGCCTTCACATACAACTAATGCTGATATTCACAAGCCTGTGAACAAAACCACTGACGATTTGTCAAGTGGTTGTCTGCTTTCTGTTCAGCAAGCAGCGTCTGTGGCTTCCATTTCATCCAGGGAACCGAGCATGGTACCGTTACCTTCAACAGGTGTGAGCATGCATGCAGTAGTAAACCAGGTGCGACCCCTTGCAACTACATTGGCTTACCGACCTAGTACCGGCTCAGCATTTGCTGGGAAGGAAGCTCATCCTGTGAGGGATCTCAGCTATTATAAGAACCTTATTAGGCAACATGGGGCTGATGATAATAATACTAGGCAAGAGACTCATGACTCCCAAATAGCTATCCGTCAAAGTAATTTCAAGGATTTGAAATCGGTTCATAGCAATAAACCGGGAGAAGTGAATTTCAAAATCCAGAAACCTTGCATATACTTCAAAAGTTCAAGAGGTTGTCGAAATGGTTCCAATTGCCCTTATCAACATGACATGTCAGCTCAATGGGGTCCTGTTCACATCCTAGGGTCCCAGAATGCAAAAAGAGCTAAATTAGGACCAGAAATCAGGGGTAGAACATTAATTTAG 1647 0.4372 MKRARKSNRVSWAPGFNLCQVKLFLSEDCPSKVSQTSQDLLQAKTSSILHSSTNESYDLPPGFEGNNSLNHIRNELSHFYQIKWKAPPLFALSQNWLVAAGEESKEKVDQKLREMKVLEAVYPRPSAIPPSPSVSLDVQEEDYDDNLTPLIPIVPIEEEELMDVNPELPATIDTPATSQAQSLHQYISTTDRPICSQPSTSSSLALTGTSGLEAELAAASAVAAAIMNSNEQGSSVDMDLLVRILNDPLLIAKLKSVHDGAAVTTVNTSANIVGLSSSGFKCTSPSVPSPPLRPDKPTSGVNPSSTVGLFPDSGLVPATSSVPLMHALDKPATQSLPFSGAIPGKLATPSAPLPSHTTNADIHKPVNKTTDDLSSGCLLSVQQAASVASISSREPSMVPLPSTGVSMHAVVNQVRPLATTLAYRPSTGSAFAGKEAHPVRDLSYYKNLIRQHGADDNNTRQETHDSQIAIRQSNFKDLKSVHSNKPGEVNFKIQKPCIYFKSSRGCRNGSNCPYQHDMSAQWGPVHILGSQNAKRAKLGPEIRGRTLI 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0182 548 ProSiteProfiles Zinc finger C3H1-type profile. 491 519 IPR000571 GO:0046872
Prci10g0182 548 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 539 - -
Prci10g0182 548 MobiDBLite consensus disorder prediction 281 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0182 Prci-Chr10 1160476 1165982 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0182 81 163 Homeobox Transcription Factor Family AT4G02560 42.169 1.26e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci10g0182 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0182 - - adu:107488052 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci10g0182 10 1160476 1165982 Prci10g0182 10 1160476 1165982 ECH