Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0158 ATGGCGGAGGAGAGATCAACTGGTGTGGTTCAGTGGTTCAGCGATTCTAAGGGCTTTGGCTTTATCAAGCCCGACGATGGAGGAGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGAAGGATATCGTAGTCTCTTAGAAGGCGATCGTGTCGAGTTCGTGATTGCCTCTGGTGACAATGACAAAACAAAAGCCATTGATGTTACTGGCCCCAATGGAGCTCCTCTACAATCCAAGAAAGATAATTACGGTGGTCGCGATGGGGGCTATGGCTTTAGCGGTGGATGGAGAGGCGGGGATAGGCGTAACAGCGGCGGAGCTAGCGGCGCTGGCTGCTACCAGTGCGGCGATGTCGGCCACTTAGCCAGAGATTGCAACCGGGGCAATAATGCTGGTGGCCCTTGTTTTAAATGTGGTGAAGTTGGGCATTTGGCTAGGGACTGTTCAATTAGAAATAGCGGCGGCGGCGGCGGCGGGGGGGCTTGCTTTAGGTGTCATGAGTATGGGCACATGGCGAGGGACTGCATCAGGGGAAGCGGTGGGGGCGGTGGAGGTTGCTTCACGTGTGGTGAAGTGGGTCACTTGGCCAGGGATTGCAGTAAAGACAGCGGAAGGCATGGCAGCGGCGGCGTCGGTACCCAAGGAAATACATGCTTTAATTGCGGGAGGCGAGGGCATTTTGCGCGAGAGTGCCCTGAAGCCTCTGCATGA 714 0.5504 MAEERSTGVVQWFSDSKGFGFIKPDDGGEDLFVHQSSIRSEGYRSLLEGDRVEFVIASGDNDKTKAIDVTGPNGAPLQSKKDNYGGRDGGYGFSGGWRGGDRRNSGGASGAGCYQCGDVGHLARDCNRGNNAGGPCFKCGEVGHLARDCSIRNSGGGGGGGACFRCHEYGHMARDCIRGSGGGGGGCFTCGEVGHLARDCSKDSGRHGSGGVGTQGNTCFNCGRRGHFARECPEASA 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0158 237 ProSiteProfiles Zinc finger CCHC-type profile. 113 126 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Prci10g0158 237 SUPERFAMILY Retrovirus zinc finger-like domains 203 234 IPR036875 GO:0003676|GO:0008270
Prci10g0158 237 Pfam Zinc knuckle 186 202 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Pfam Zinc knuckle 112 126 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Pfam Zinc knuckle 135 150 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Pfam Zinc knuckle 217 234 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Pfam Zinc knuckle 162 176 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 ProSiteProfiles Zinc finger CCHC-type profile. 187 202 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 SUPERFAMILY Retrovirus zinc finger-like domains 105 152 IPR036875 GO:0003676|GO:0008270
Prci10g0158 237 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Prci10g0158 237 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Prci10g0158 237 SUPERFAMILY Retrovirus zinc finger-like domains 153 203 IPR036875 GO:0003676|GO:0008270
Prci10g0158 237 ProSiteProfiles Zinc finger CCHC-type profile. 136 149 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Prci10g0158 237 Gene3D - 97 130 - -
Prci10g0158 237 SMART csp_8 7 72 IPR011129 GO:0003676
Prci10g0158 237 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Prci10g0158 237 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Prci10g0158 237 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Prci10g0158 237 SMART c2hcfinal6 135 151 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 SMART c2hcfinal6 186 202 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 SMART c2hcfinal6 218 234 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 SMART c2hcfinal6 112 128 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Gene3D - 1 83 IPR012340 -
Prci10g0158 237 ProSiteProfiles Zinc finger CCHC-type profile. 219 234 IPR001878 GO:0003676|GO:0008270
Prci10g0158 237 Gene3D - 213 237 - -
Prci10g0158 237 Gene3D - 131 157 - -
Prci10g0158 237 Gene3D - 158 181 - -
Prci10g0158 237 Gene3D - 182 209 - -
Prci10g0158 237 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Prci10g0158 237 PANTHER COLD SHOCK DOMAIN PROTEIN 2 180 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0158 Prci-Chr10 990485 991546 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Prci10g0158 CSD 2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0158 K09250 - qsa:O6P43_033606 310.457