Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci10g0097 ATGGCGGATTCTCCTCTCAGAAGGACTTCAAGGTCCCCGTCCCCATGGAGAGCCCAGTCAAGATCGAGATCCAGGTCAAAGACTCCGCCTAGGGCTAGGTCCCGGTCTCGTTCTAGATCAAGATCCTGGTCACGACGCAGACCAAGGTCCCGTTCAAGAAGCCGCGGCAGATCAACGTCAAGAAGTTATGGAAGGACTGATGCCGTAAATCCTGGGAATACTCTCTATGTTACTGGCCTATCTTCAAGGGTTACTGAGAGGGACCTAGAAGAGCACTTTTCTAAGGAAGGAAAGGTTGCCTCATGTTTTCTGGTGGTGGAGCCTCGTACACGTATTTCCCGTGGTTTTGCTTTTGTTACCATGGATTCTGTTGAGGATGCGAACCGCTGTATCAAGTATCTTAATCAATCTGTACTTGAAGGTCGCTATATTACAGTTGAGCAGTCACGGAGGAAAAAGCCTAGAACTCCTACACCAGGGCACTATCTTGGTCTCAAGAGCACTAGAGACTATGGGTACCGTGGCGATCGTGGAAGGTACCGTGGTGGGTCAGGTCGTGATGACTATACTTATCGTAGGTCTCCAAGGCGCTCACCATACCGAGGTGGTCGGGATGTATCACTGCGGCACTCACCCTATGGTGGAAGATCTCGGGGGGACAGATCAAGGTCCCTCCCTTACTCTCCTTATGGCAGTCCAGACAGGAAGTATGCTCGGGGATCTAGGTGA 729 0.513 MADSPLRRTSRSPSPWRAQSRSRSRSKTPPRARSRSRSRSRSWSRRRPRSRSRSRGRSTSRSYGRTDAVNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKYLNQSVLEGRYITVEQSRRKKPRTPTPGHYLGLKSTRDYGYRGDRGRYRGGSGRDDYTYRRSPRRSPYRGGRDVSLRHSPYGGRSRGDRSRSLPYSPYGSPDRKYARGSR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci10g0097 242 MobiDBLite consensus disorder prediction 148 242 - -
Prci10g0097 242 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 72 224 - -
Prci10g0097 242 MobiDBLite consensus disorder prediction 59 74 - -
Prci10g0097 242 MobiDBLite consensus disorder prediction 1 74 - -
Prci10g0097 242 CDD RRM_SF 75 147 - -
Prci10g0097 242 Gene3D - 11 158 IPR012677 -
Prci10g0097 242 SUPERFAMILY RNA-binding domain, RBD 69 183 IPR035979 GO:0003676
Prci10g0097 242 MobiDBLite consensus disorder prediction 170 204 - -
Prci10g0097 242 MobiDBLite consensus disorder prediction 24 58 - -
Prci10g0097 242 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 157 - -
Prci10g0097 242 SMART rrm1_1 74 147 IPR000504 GO:0003723
Prci10g0097 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 144 IPR000504 GO:0003723
Prci10g0097 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 151 IPR000504 GO:0003723
Prci10g0097 242 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci10g0097 Prci-Chr10 615112 618407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci10g0097 72 158 Eukaryotic Initiation Factors Gene Family AT1G49760 31.034 5.62e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci10g0097 K12897 - twl:120015257 283.108